Solanum dulcamara (climbing nightshade): 129892576
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Entry
129892576 CDS
T09577
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129892576
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129892576
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129892576
mRNA degradation factors
5'-3' decay
Decapping complex
129892576
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
WDR55
Beta-prop_EML_2
Beta-prop_Vps41
GerPC
Motif
Other DBs
NCBI-GeneID:
129892576
NCBI-ProteinID:
XP_055824129
LinkDB
All DBs
Position
6:complement(120457..129674)
Genome browser
AA seq
1406 aa
AA seq
DB search
MASSPGNPNQPGGTGTGPFDIHKFFKPSNPNPQNPTLISSPFPPPNASYPPPTSAGAGVG
PGGVYPYPPQTTTPFHHHPQFSQHMPQYTTTHDTQLMHQQRSMSFPTPPLQPPPPPTSSP
HQFPNPNPGARLMALLSAPPSTLEVPIQSTMPVPPIQPSTSGSELSDFSSGPNVGVSHSG
PGPLRMPSSKLPKGRHLNGDHIVYDIDVRFPSEVQPQLEVTPITKYGSDPGLVLGRQIAV
NKTYICYGLKLGAIRVLNINTALRSLLKGLAQRVTDMAFFAEDVHLLASASVDGRVYIWK
ITEGPDEEEKPQITGNIVIAIHIVGEGESVHPRVCWHCHKQEILVVGIGKRILKIDTIKV
GKGAVFSADEPLRCPVDKLVDGVQLIGTHDGEVTDLSMCQWMTTRLVSASVDGTIKIWED
RKPLPIAVLRPHDGHPVNSVTFLAAPHRPDHIILITGGPLNREIKIWASASEEGWLLPSD
AESWRCTHTLELKSSAEANVEEAFFNQVVALSQAGLLLLANAKKNAIYAVHLEYGPNPEA
TRMDYIAGFTVTIPILSFTGTSDLLPHGEQIVQVYCVQTQAIQQYALDLSQCLPPPTESV
AFERTESGISRDAASIEGFAPVDPPGSKQQEFPLSSSAPKSSVHEIGSENSPTARYSTST
APTELTTSQEFASSLLETKSSTLPSVTSNSDIAPSASPPPPLSPKLSRKLSGFRGPSNSF
GADTSDHDQVGNQKVEYPVDLQKDGTPSNLSDVASLDDEHKMSRDDVPSGISHPVKFKHP
THLVTPSEILMTRSSSEVSIVNEQKSESEMNIQDAVTNNDTHNVEMEVKAGCEAKFSQKN
DIGSPNLHSFVSENKEKVFCSQVSDLGLEMVRERRALSPETYTVEESRQFDGVSGSDGPS
QPSVTPEGDHDSAKHFSEKDLDSTMSVTVHQPPAPSAKGKKQKGKNSQVSGPSSSSPSAF
NPTDSPNEAVVSSSSMETAFSQILSMREMLNQVLTMQKETQKQMEMMVAVPVTKECRRLE
AALGRSMEKSVKANSDALWARLQEESAKQEKSLRDRTQQITNLISSCLNKDMPGLMEKLM
KKELAAVGQAVARIITPTIEKTISAAISEAFQKGVGDKAVNQLEKAVNSKLEATVARQIQ
AQFQTSGRQALQETLKSTLEVSVIPAFEMSCKAMFEQVDSTFQKGIADHSVAAQQQFESV
HTPLALALRDSINSASAMTQTLSGELADNQRQLLALAVSGANSQSANPLISHMNNGSLLH
EKIETPPDPTKELSRLLGEHKYEEAFTAALQRSDVSIVSWLCSQVDLPGILSSNPLPLSQ
GVLLSLLQQLSCDISAETGQKLSWMRDVLSAINPTDPVIIVHVRRIFEQVYQTLQLRRSA
ANVPPAEVSSIRLILHVINSMLMTVK
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttctcctggcaatccgaaccaaccaggtggtactggtactggaccatttgat
attcacaaattcttcaaaccctcaaaccctaatccccaaaaccctactttaatttcatcc
cctttcccacctcctaacgcttcttacccaccacccacctccgccggagccggagttgga
cccggcggggtttacccttacccacctcagacaacaaccccttttcaccatcaccctcaa
ttcagtcaacacatgcctcaatacactaccacacatgatacccagttaatgcatcagcag
agatccatgtctttccccaccccaccacttcaaccaccaccacctcctactagtagtcct
caccaattccctaaccctaaccctggtgctaggcttatggcactgttgagtgctccgccg
tctactttggaagttcctatacaatccactatgccggtgcctcctatacaaccttccact
tcggggtctgagctttcggatttctcctctggaccgaatgttggcgtttctcattcgggt
ccgggaccattgagaatgccgagcagtaagttacctaaagggagacatttgaatggtgat
catattgtttatgatatagatgttaggtttcccagtgaggtgcagccacagctggaggtt
actcccattactaagtatggttcggatcctggtcttgtattaggccggcaaattgcagtt
aacaaaacctacatatgttacggattgaaattgggggctattcgggttctcaacattaat
actgcattgagatcattgcttaaaggtcttgcacagagggtcacagacatggctttcttt
gcagaggatgttcatctcttggctagcgcgagtgttgatggccgggtttatatatggaaa
attactgaaggaccagatgaagaagagaagccacaaattacaggaaatattgtcattgct
attcatattgtcggtgaaggggaatctgttcacccacgtgtttgttggcattgtcataaa
caagaaattctcgtggttggaattgggaaacgcattttgaaaattgataccattaaagtg
ggaaaaggtgcagtattttcagctgatgaacctctgaggtgtcctgttgacaagttggtt
gatggggtacaacttattggtacccatgatggagaagtgactgatttatcaatgtgccag
tggatgaccactcgtttggtatctgcatcagtggatggcacgattaagatatgggaagac
cggaagccacttccaatcgcagttctcaggcctcatgatggtcatcctgttaattctgtt
accttcttggctgccccacaccgcccagatcacatcatactcatcactgggggtcctctt
aatcgggaaataaagatatgggcatcagcgagtgaagaaggctggttgcttcccagtgat
gctgagtcatggcgctgtacacatacattggagctgaagagttcagctgaggctaatgtc
gaagaggcattttttaaccaagttgtagccttgtctcaagcaggtctgctcctactagct
aatgcaaaaaagaatgctatatatgctgtgcatctagagtatggcccaaacccagaggct
acccggatggattacatagcaggatttacagtcaccataccaattttgagtttcactggg
acgagtgacctattgcctcatggtgagcagattgtgcaggtgtattgtgtacagacgcag
gccattcagcagtatgccttggacttgtcccagtgcttaccacctccaacagagagtgtg
gcttttgaaaggacagaatctggtatttcgcgcgatgctgccagcattgaaggatttgct
cctgttgatcccccaggaagtaaacagcaggagttccctttatctagttcagcacctaaa
tcatcagtgcatgaaattggctctgagaattcaccaacagctagatattctacaagtact
gcacctactgaattgaccacctctcaagaatttgcttcctcccttctagaaactaaatct
tctactttgcccagtgtaactagtaatagtgatattgcccccagtgcatcacctcctcct
cctttgagtcctaaattgtctcgaaaactatctggttttagaggtccatcaaacagcttt
ggggcagacacctctgatcatgaccaagttggaaatcaaaaagttgaatatccagttgat
ttgcaaaaggatggcacaccctcaaacttgtccgatgttgcttccttggatgatgaacat
aaaatgtcacgggatgatgttccctctggtatcagtcatcctgtaaagttcaagcaccca
actcatttggtgactccttcagagatattgatgactagatcatcctctgaggttagcatt
gttaatgagcagaaaagtgagtcagaaatgaatattcaggatgctgtaactaacaatgac
acccacaatgtagagatggaggttaaagctggctgtgaagcaaaattcagtcaaaaaaat
gatattggctctccaaaccttcattcttttgtgtcagaaaataaggagaaagttttttgc
tctcaagtatctgatcttggattagaaatggttcgagaacgtcgcgccttatctcctgag
acctatactgttgaggaatctaggcagtttgatggggttagtggaagtgacggaccatct
caaccttcagttacaccagagggagatcatgactctgcaaagcacttctctgaaaaggat
ttagactcaacgatgtcagtcactgttcatcaaccaccagctcccagtgcaaaagggaaa
aagcaaaaggggaagaattctcaagtgtctggcccatcttcatcatctcctagtgctttt
aatccaacagattctccaaatgaggctgttgtcagctcaagttctatggaaactgctttc
tcacaaattttgtccatgcgtgagatgctaaatcaggttctgactatgcaaaaagaaaca
caaaagcagatggaaatgatggttgctgttccagtgaccaaagaatgtagaagacttgaa
gctgccttgggacggagcatggaaaaatctgttaaggctaattctgatgctttatgggct
cgtttacaagaagagagtgcaaaacaggagaaatctctccgtgatcgtacacaacaaata
accaatttgatctctagctgcttaaacaaggacatgccaggtttgatggaaaaattaatg
aagaaagaattagctgctgttggacaagcagtagcgcgcattattacccctactattgag
aaaactatatcagctgcaatttcagaggcattccagaaaggagttggcgacaaggcagtg
aaccaactagagaaagcagtaaattccaagcttgaagctactgtagctagacaaatccaa
gcacaattccaaacctctggcaggcaagctcttcaggaaacactaaaatctactttggaa
gtctcagtgatccctgccttcgagatgtcgtgcaaggcaatgtttgagcaagtagattca
acatttcagaaaggcattgctgaccactcggttgctgcacaacagcaatttgagtccgtg
catacgccgttggcacttgctctaagagattccatcaattcagcatcggcaatgacccag
acattgagcggagagcttgctgataatcagagacagttgcttgctcttgcagtttctgga
gcaaattcccaatcagcaaatccactgattagccacatgaataatggatcattgctgcat
gaaaagatcgagacacctccagatccaaccaaagagttatctagacttttaggggagcac
aagtatgaggaagctttcactgcagcattacaaaggagtgatgtgtcaattgtgtcatgg
ttatgctctcaggttgatttgcctgggattttgtcctcgaatcctcttcctttgagccaa
ggagtgctcctttcacttcttcagcagttgtcgtgtgatattagcgcagagacaggccaa
aaactctcctggatgagggatgtgctatctgccataaatccaactgacccagtgatcata
gtgcatgttcgacgcatcttcgagcaagtatatcagacattacaacttcgcagaagtgct
gctaacgtgccgcctgctgaagtttcgagcattcggcttattttgcatgttatcaattcg
atgctgatgaccgttaaatga
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