Solanum dulcamara (climbing nightshade): 129893282
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Entry
129893282 CDS
T09577
Name
(RefSeq) protein CTR9 homolog
KO
K15176
RNA polymerase-associated protein CTR9
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdul03021
]
129893282
Transcription machinery [BR:
sdul03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
129893282
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_8
TPR_12
TPR_14
TPR_19
TPR_16
TPR_17
TPR_CcmH_CycH
TPR_6
TPR_11
TPR_9
TPR_7
ANAPC3
TPR_10
ARM_TT21_5th
TPR_Slam
ARM_TT21_C
ARM_TT21_2nd
Fis1_TPR_C
Motif
Other DBs
NCBI-GeneID:
129893282
NCBI-ProteinID:
XP_055824765
LinkDB
All DBs
Position
6:complement(25925856..25951896)
Genome browser
AA seq
1095 aa
AA seq
DB search
MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQFR
QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFIMATQYYNKA
SRIDMHEPSTWVGKGQLLLAKGDIEQAFAAFKIVLDGDRDNVPALLGQACVQFSRGRYSD
SLELYKRALQVYPDCPAAVRLGIGLCRYKLGQLDKAKQAFCRVLQLDPENVDALVALAIL
DLQNNEASGIRRGMEKMQRAFEMYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTTH
GPTKSHSYYNLARSYHSKGDYEKAGMYYMASVKESSKPHEFVLPYYGLGQVQLKLGDLRS
SLANFEKVLEVHPESSEAVKALAHIYVQLGQSEKVQECLKKATKIDPRDPQAFLDIGELL
ISNDPAAALEALKTARNLLKKSNEEVPIELLNNIGVLHFEREEFEFATQSFKEALGDGIW
IRFLDAKARSDDPTSGGLLYPNGEAQSDLFKSVQYPIDASSSVRQYKDFQLFHRLEEQGS
AVELPWNKVSTLFNIARLLEQLHDTETASIFYRLILFKYPEYADAYLRLASIAKARNNVQ
LSNELISDALKVNEKCPDALLMLGDLELKNDDWVKAKETFRSAKDATDGIDSYATLCLGN
WNYFAAIRNEKRAPKLEATHLEKAKELYTKVLFQHNGNLYAANGAGVVLAEKGQFDISKD
LFTQVQEAASGNVFVQMPDVWINLAHVHFAQGNFALAVKMYQNCLRKFYHNTDSQVLLYL
ARTHYEAEQWQDCKKTLLRATHLAPSNYTLRFDTGVALQKFSASTLQKTKRTVDEVRATV
AELKNAVRLFSLLSAASNLHVHGFDEKKIETHVGYCKHLLEAAKVHCEAAEREDQQNKQR
LELARQVTLAEENRRKAEEQRKYQLERRKQEDELKQVMQQEQHLERIKEQWKSSTPSSKR
KDRPQNEDDEGGHGERRRKKGGKRRKRDKKSHYESEEAEAEMDDQEEVDDVDRNRNHEVS
YDQTDDHDDQAENNPQDLLAAAGLEDSDAEDDIVAPSSNASRRRQALSESDEDEPLQRQG
SDGEDGDNVAADDDE
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctgtgtacattccagtgcaaaactcggaagaggaggttagggtagcattggac
caactccctagggatgcttctgacattcttgacattctcaaggctgaacaagctcctctt
gatctctggcttattattgctagggaatatttcaaacaaggcaaaattgatcagtttcgg
caaatcttggaagaagggtctagcccagagattgatgaatattatgcagatgtgaggtat
gagaggattgccattctaaatgcattaggtgcatattacagttaccttgggaagattgag
acgaaacaaagagaaaaggaagagcactttataatggcaacacaatattataataaagca
tccagaattgacatgcacgagccctctacgtgggttgggaaaggtcagcttttacttgcc
aagggcgatatagagcaggcatttgctgctttcaagattgtacttgatggcgatcgtgat
aatgttcctgctctcctgggtcaggcctgtgttcagtttagccgtggacgatattctgat
tcactggagctatataagagggccttgcaagtgtatcctgactgtcctgctgcggtaagg
ctcggaataggtctctgtagatacaaattgggccaattggataaggcaaaacaagcattt
tgtcgtgtcttgcagttagatccggaaaatgtggatgctctggtggcactagcaattctg
gatctgcaaaataatgaagcttctggtattaggagaggaatggaaaagatgcaaagagcc
ttcgagatgtatccttactgtgcaatggccctaaattatctggccaatcattttttcttc
actggtcagcatttccttgtggagcaattgactgagactgcacttgctgtaaccactcat
gggccaactaagtctcattcgtactacaatttggcacgctcctaccacagcaagggtgac
tatgaaaaagctggaatgtactacatggcgtctgtaaaagaaagcagtaagccgcatgaa
tttgtattaccttattatggattgggacaagtacagctgaagttgggagatcttcggagt
tcgctggcgaattttgagaaagtcttggaggttcaccctgaaagttccgaggcagtgaaa
gctcttgcacacatttatgtgcagcttggccagtcagagaaggttcaggaatgtttgaag
aaagccacaaaaattgatcctcgtgatccccaggcctttttggatataggagagctgtta
atttcaaatgatcctgctgctgctttagaggccttaaaaacagcgcgtaatttgcttaag
aaatcaaatgaagaagtaccaatagagttactcaacaatattggcgtcctccattttgaa
agggaagaatttgagtttgctacacaaagttttaaggaagctttaggtgatggcatatgg
attaggttccttgatgctaaagcacggtctgatgatccaacttctggagggcttttatat
cccaatggtgaagcacaatctgatctattcaaaagtgtacaatatccgatcgatgccagt
tcatctgttcgacaatacaaggacttccagctatttcatagacttgaggaacaaggaagt
gctgtggaacttccttggaacaaagtttcaacactctttaacattgcaagattactggag
cagttacatgacacagaaactgccagcatcttttaccggcttatcttattcaagtatcca
gagtatgcagatgcttatctgaggctggcttccattgcaaaagcccgaaataatgtgcag
ctaagcaatgagttgattagtgatgcgctaaaggtgaacgagaagtgtccagatgcactg
ctaatgcttggtgatttggaacttaagaatgatgactgggttaaggcaaaagaaactttt
cggtctgctaaggatgcaactgatggaattgattcttatgctactctttgtctgggaaat
tggaattacttcgcggcgattcgtaatgagaaaagagctccgaagttggaagctactcat
ctggagaaggctaaggaactttatacaaaggttctcttccagcataatggaaatctctat
gctgcaaatggtgctggtgttgttttggcagaaaaaggtcaatttgatatttcaaaggat
cttttcacacaggttcaagaagctgccagtggaaatgttttcgtccaaatgcctgatgtg
tggattaatcttgcacatgttcactttgctcaaggcaactttgcattggctgtgaaaatg
tatcaaaattgcctgcggaaattttatcataataccgacagtcaagtgcttctttattta
gcaagaactcattatgaagctgaacagtggcaggattgtaaaaagactttattaagagcc
acccacttagcaccttcaaattatacgttgagatttgacactggtgtagcactacagaaa
ttttcagcctcaacgttacaaaagaccaagcggactgttgatgaggtgagggcaacagtt
gcagagctgaagaatgcagttcgcttattcagtctattgtctgcagcttcaaatcttcat
gttcatggatttgatgaaaaaaaaattgaaactcatgttggatactgcaagcatttgctt
gaggctgcaaaagttcattgtgaggcagctgagcgtgaagatcaacagaataagcagaga
ctagaacttgctcgtcaggtcacattggctgaagaaaatcgtagaaaagctgaggaacag
agaaaatatcaactagagagacgaaaacaagaggatgaactcaagcaagtgatgcagcaa
gaacagcatttagagcgtattaaggaacaatggaaaagcagtactccttcctctaagcgg
aaggacaggccccagaatgaagatgacgagggcgggcatggtgagaggaggaggaagaaa
ggtgggaagcggagaaagagggacaagaagtctcattacgaatctgaggaagcagaagct
gagatggatgatcaggaagaagtggatgatgttgaccgtaacagaaatcatgaagtatct
tatgatcaaacagatgatcatgatgatcaagcagagaataatccacaggatctacttgca
gcagctgggcttgaagattctgatgccgaggatgacattgttgcaccttcatcaaatgca
agtcggcgaaggcaggcactgtctgaatcagatgaggatgagccattgcagaggcaggga
agtgatggagaagatggggacaatgttgctgcggatgatgatgaatga
DBGET
integrated database retrieval system
