Solanum dulcamara (climbing nightshade): 129893882
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Entry
129893882 CDS
T09577
Name
(RefSeq) RNA polymerase II C-terminal domain phosphatase-like 3 isoform X1
KO
K18999
RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:
3.1.3.16
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sdul01009
]
129893882
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdul03021
]
129893882
Enzymes [BR:
sdul01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
129893882
Protein phosphatases and associated proteins [BR:
sdul01009
]
HAD phosphatases
Fcp/Scp phosphatases
129893882
Transcription machinery [BR:
sdul03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
129893882
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_CPL3
NIF
BRCT
PTCB-BRCT
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
129893882
NCBI-ProteinID:
XP_055825280
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All DBs
Position
7:complement(58055027..58061840)
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AA seq
1245 aa
AA seq
DB search
MMEECNPVQEVEEGEISDSASVEEISEDAFNRQDPPAKIVSSNLPNNQNQNQSQNSTRVW
TMRDLYKYPISRDYARGLYNLAWAQAVQNKPLDELFVMTTDNSKQSADVESSEIDKVIID
VDDDANAKEEGELEEGEIDLDADLVLNVGDSVKTSKETNFIREQLQSVTLGETHKSFPVV
CSKLQSSLDSLGELAVSTDFVPGKDILIQLFMTAVRTINSVFCSMNKNQMQENRDILSRL
LFHAKSQLPALMSSEQLKEVDAVIISINQSVVSSNTEDNDKDNGIKVVELLDMKVSHKSS
ENANQDLTSVNKYDLGAVSTKSSGLVEQSVSFESFKPGLATSKAKGLSIPLLDLHKDHDE
DTLPSPTREIGPHFPVAKASTQAHGMVKLELPLFARSLEKGNSLVHPYETDALKAVSSYQ
QKFGRSSLFVSEKLPSPTPSEEGDSGEGDINGEVSSSNVVHNASLLNESSMGQPIVSSVP
QTNILAGQGLGTARTADPLSFLPNPSLRSSTAKSRDPRLRLATSDAAAQNTNKNILPIPD
IDLKLEAPLEMIGSKKQKTAELPVFDAPLSKRQKSEQTDSIIVSDVRPSTGNGGWLEDRG
TAGLPIMSSNYATDSSDNDIQKLEQVRASITTIPSVIVKADENFPVTGISTSATLHSLLK
DIAINPSIWMNIIKMEQQKSADASRTTAQASSSNSILGAVPSMDVVAPRTSAIGQRSVGI
LQTPTHTAAAAADEVAIVRMKPRDPRRALHNTAVLKGGNVGSDQCKTGVAGTHTMIRSLC
FQSQVDQLDRKSAVALSTTPPDIARQFTKNLKNIADMISVSPSTSPSAASPDMISVSPST
SPSAASRTQTQCIHVYQSRLEGKGAVSEPSERLNDAGLDSEKGSPGSLQPQISWGDVEHL
FEGYSDQQRADIQRERARRLEEQKKMFSVRKLCLVLDLDHTLLNSAKFVEIDPVHEEILR
KKEEQDREKPYRHLFRFPHMGMWTKLRPGIWNFLEMASNLFELHLYTMGNKLYATEMAKL
LDPKGDLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLN
LIVVERYIYFPCSRRQFGLPGPSLLEIDHDERPEDGTLASCLGVIQRIHQNFFAHRSIDE
ADVRNILATEQQKILSGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTSQIDDQVTHV
VANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRANEHDFSIKS
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atgatggaagaatgtaatccagtccaagaggtagaggagggtgagatctcagattcggct
tcagttgaagaaatcagtgaggatgccttcaataggcaagacccacctgctaagattgtc
agttccaacttacccaataatcaaaatcaaaatcaaagtcaaaattcgactagggtttgg
accatgagagatctatataagtatccaatttcgagggattatgctaggggtttgtataac
ctggcttgggctcaagctgtgcagaataagcctttagacgaacttttcgtcatgactact
gacaattcgaagcagtctgctgatgtcgaatcttctgagattgacaaggtcatcattgat
gtggatgacgatgctaatgctaaggaggaaggagagttggaggaaggcgagatcgacttg
gatgccgacctagttctaaatgttggtgattctgttaaaacttcaaaggagaccaatttc
attagggaacaacttcagagtgttactctaggcgaaacccacaaatcctttcctgtggtt
tgttccaaattgcaaagttcattagacagcttgggggaactagctgtttcgacagatttc
gtgccagggaaagacattcttattcaactctttatgactgcagtgcgaaccataaattct
gttttctgctccatgaacaagaatcagatgcaagaaaacagagatattctatctaggttg
ctttttcatgcaaagagccaattacctgctcttatgtcttctgagcagttaaaagaggtg
gatgccgtgattatctctattaaccagtcagttgtttcctcaaatactgaagacaatgac
aaggacaatgggatcaaagttgttgaactgttagatatgaaggtttctcataaatcttct
gaaaatgcaaatcaggatcttacttctgtaaacaagtatgatttaggtgctgtatctacc
aaatcttctggcctggtggagcagagtgtgtcatttgaatcttttaaaccaggattagcc
acttctaaagctaaagggttatccattcctttgctagacctccataaggaccatgatgaa
gatactcttccgtcacctacacgagaaattggaccacatttccctgttgcaaaagcatct
acacaggctcatggaatggtgaaactggagttgcccctttttgcgcgttctcttgagaaa
gggaattctttagtgcatccttatgaaactgatgcccttaaagctgtttcgtcttatcaa
cagaaatttggtcgaagttccctttttgttagtgaaaagcttccaagtccaaccccatct
gaagagggtgatagtggcgaaggggacattaatggggaggtctcaagttctaatgttgta
cataatgccagccttctgaatgaatctagcatggggcagccaatagtgtcttctgttccc
cagaccaatattcttgctggacaaggactgggaactgctcggactgcagatcccctgagt
tttctgccaaatccttctttgcgatcttctacagcaaaaagtagagatcccagactcaga
ttggcaaccagcgatgcagctgctcagaacacgaataaaaatatcttgcctatcccagac
attgatttgaaattagaggctcctttagagatgattggttcaaaaaagcagaagacggca
gagctaccagtctttgatgctccattgtcaaaaagacaaaaaagtgaacagactgattca
atcattgtgagtgatgtgcgtccttcaactggaaatggtggttggttagaggatagaggg
actgctgggttgccaattatgagtagtaactatgctacagatagcagtgacaatgacatt
cagaaattggagcaagtaagagctagtatcactactatacctagtgtcatagttaaagct
gatgagaactttccagtgactggcattagcacgtcagcaactttgcattctttattaaaa
gatatagcgataaatccatcaatatggatgaatataatcaagatggaacagcagaaatct
gctgatgcttctagaactacagcacaagcttcaagttctaactctattcttggagcagtt
ccatcaatggatgtagtagctcccagaacttctgctattgggcagagatcagtaggaata
cttcagactcctacacacacagcagcagcagcagcggatgaagtggctatagtccgcatg
aaacctcgcgaccctcggcgtgctcttcataatactgcagttctaaagggtggtaatgtt
ggatcagatcaatgtaaaaccggtgtagcaggcacacacactatgataagaagtctttgt
ttccaaagtcaagtggatcagttggataggaagtcagctgtggcactttcgactacacca
ccagacattgctcgccaattcacaaaaaatttgaaaaatatcgctgacatgatctctgtt
tcaccatccacatcaccgtctgctgcttctcccgacatgatctctgtttcaccatccaca
tcaccgtctgctgcttctcgaactcagacacaatgcatacatgtttatcagagtagattg
gaagggaagggagcagtttctgagccaagtgaacggctgaatgatgctggcttagattct
gaaaaaggttctcctggttcgttgcaaccacagatctcttggggagatgttgagcatcta
tttgaggggtatagcgaccaacagagagctgatattcagagagaaagggctaggaggctt
gaggaacagaaaaaaatgttttctgttcggaagctatgtctcgtcttggacttggaccat
actcttttaaattcagcaaagtttgttgaaatcgacccagttcatgaagagatattgagg
aagaaagaggaacaagaccgtgaaaagccgtataggcacctattccggtttccacacatg
ggaatgtggaccaagttacggcctgggatctggaatttcttggagatggctagcaatctt
tttgagctgcatctctataccatggggaacaaactatatgccacagagatggccaaattg
ctagatccaaaaggggatctgtttgctggacgagtgatctccaggggtgacgatggagat
ccttttgatggggatgaaagggttcctaagagtaaggacttggagggggttttgggcatg
gagtcggctgttgtgattatagatgattctgtcagagtctggccacataacaagctaaat
ttgattgttgtagagaggtatatttactttccttgcagcagacgacaatttggtctccct
ggtccttctcttcttgagattgatcatgatgaaagaccagaagatgggacattggcctct
tgtttgggggttattcaaagaatacatcagaattttttcgcacatcggtccatagatgaa
gctgatgttaggaacatcttagccacagaacaacaaaagattctgtcaggttgccgtatt
gtcttcagcagagtatttcctgttggtgaagccaatcctcatttgcatcctttgtggcag
accgctgaacagtttggtgctgtctgcactagtcaaattgatgatcaggttacccacgtg
gttgccaattctcttgggacggataaggttaattgggcactttccactggacgatttgtt
gttcatcctggctgggtggaggcatcagctttactttatcggagggcaaatgaacatgat
ttttctattaaatcttaa
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