Solanum dulcamara (climbing nightshade): 129894062
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Entry
129894062 CDS
T09577
Name
(RefSeq) nuclear pore complex protein NUP96 isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129894062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129894062
03036 Chromosome and associated proteins [BR:
sdul03036
]
129894062
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
129894062
Chromosome and associated proteins [BR:
sdul03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
129894062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Motif
Other DBs
NCBI-GeneID:
129894062
NCBI-ProteinID:
XP_055825543
LinkDB
All DBs
Position
7:5538248..5545566
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AA seq
1033 aa
AA seq
DB search
MEVDLGAPEQLIVSQSQCKRRKISALDPILGENEAALPTLRSPDYFTDPCLSELAIRELM
SSGYCSKVENFTVGRFGYGFVKFSGETDVRGLDLDRIVKFSRHEVIVYEDENDKPPVGMG
LNKPAEVTLLLEIRSAKHYDVDSSGEMVERLRLRTERQGARFISFDPSNGEWKFFVQHFS
RFGLNEEEDEDMITDDVSPEVQDPVDINGEDVSDIDEETFLANTTDLSHSLPAHLGLDPV
KMKEMRMLMFPAEEEDIDDYHDVPFDRKPQFSKESSKSPLQHKYQRVSPPLTRKTPLALI
EYKHGSFGSDSAGSILMTQQNKGVLLKTTKTEGFKLVVRQQTPISGSYSCNVVDAGLFMG
RSFGVGWGPNGVLIHSGAPVGSKDNQSLSSIINLEKVAFDQVARDENKKFREELVDLCFD
SALHLHKEISHETKEFGEGPFALKLQRLVCDRQMLSDVCRSYIGVIERQLEVPDLSPASR
IFLMHQAMIWELIKVLFSSRQLSGKLKSLEDEDEEDMIPDARETASDVDPEALPLIRRAE
FSFWLQESVCHRVQEEVSSLNDSSDLQHMFLLLTGRQLDAAVELAASRGDVRLAMLLSQA
GGSMVDRSDVARQLDIWRVNGLDFNFVETERIRVLELVAGNIHRALHDVDIDWKRFLGLL
MWYQLPPETELPVVFRTYQRLLNEGKAPSPVPVYIDEGPIELSMNWHAVKHFDLSYYLML
LHANQEIDFSALKTMFCAFASTNDPLDYHMIWHQRAVLEAIGAFSSNDLHVLDISFISQL
LCLGQCHWAVYVVLHMPHREDCPYLQAALIREILFQYCETWSSQDLQRQFIEDLGIPSAW
LNEALATYFNYYFEFPKALEHFLECGKWQKAHTIFMTSVAHSLFLSEEHSEIWRLTASME
DHKSEIEDWDLGAGIYISFYLLRSSLQEDNDAMNQVDTLENKDNACADFIRWLNNSLAVW
TSRLPVKARVVYSKMAEEICNLLLSDSGGSSSNEVQLSCYDTIFKAPIPEDTRAYHLQDA
VSLFTSYLSEVLS
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggaggttgatttaggggctcctgaacaacttattgtttctcaatctcaatgtaaaaga
agaaaaatttctgctttagatccgattttgggcgagaatgaagctgctttacctaccttg
cgatctcctgattattttactgacccatgcttgagtgaattggctattcgggagcttatg
agctcagggtattgcagcaaagttgaaaattttactgttgggaggtttggttatgggttt
gtcaaattttctggggaaacagatgttagggggttggatttggatcgaattgtcaagttt
agcagacatgaggtgattgtatatgaagatgaaaatgacaagcctccagttggcatgggg
cttaacaaacctgctgaagtaactttgctactggaaatacgatccgcaaaacactatgac
gtggattcttctggagaaatggtggagagattaagactcagaacagagagacaaggagcg
cgttttatctcatttgatccatcaaatggagaatggaaattcttcgttcaacacttcagc
agatttggtttgaatgaggaagaagacgaagatatgataactgatgatgtgtctccggaa
gttcaagatccagtggatatcaatggagaagacgtttccgacattgatgaagaaaccttc
ttagccaatacaactgatctttcacattctcttcccgctcatcttgggttagatcctgta
aagatgaaagaaatgagaatgctgatgtttccagcagaagaagaggatatagatgattat
cacgatgttccttttgatagaaaaccacaattcagtaaggaatcttcaaaatcccctttg
cagcataaataccagagagttagtccacctttaactcgcaagactccattggctttgatt
gaatacaaacatggtagttttggctcggactcagctgggtccattttgatgacccaacaa
aataagggtgtgcttctaaagacaacaaagactgaaggtttcaagctggttgttaggcag
caaacacctataagtggatcctactcttgtaatgttgttgatgcaggattgttcatgggt
agatcatttggagttggctgggggcctaatggtgttcttattcattctggcgctccagtt
ggtagtaaagacaatcaaagtttgtcttcaataatcaatttggagaaggttgcatttgac
caagtagctagagatgaaaataaaaagtttagggaggaacttgttgatttgtgttttgat
tcagccctccatcttcacaaggaaattagtcatgaaaccaaagagttcggggagggaccc
tttgcgttaaagcttcaaagacttgtgtgtgatcgtcaaatgctttcagatgtatgtcgg
agttatattggtgtcattgagaggcaattggaggttcctgacttatcgccagcatcccgt
atttttctgatgcaccaagcaatgatttgggaattaataaaagtgcttttctcgtctaga
caattgagtgggaaattaaagtctcttgaagatgaggatgaggaagatatgatacctgat
gcgagagaaactgcttcagatgttgatccagaggcacttccattgataaggagagcagaa
ttcagcttttggttgcaagagagtgtttgtcacagggtacaggaagaagtaagttctttg
aatgattcaagtgatctacaacatatgtttttacttctaactggtcggcagttggatgct
gctgtggaactggcggcttctaggggagatgtgcgacttgcaatgcttcttagccaagct
ggtggttcgatggttgatcgttctgatgttgctaggcagcttgatatttggagagtaaat
gggttggacttcaatttcgttgagacagagaggattagggttcttgagttggttgctggc
aacattcatagagcattacatgatgtagacattgactggaaaaggtttctggggttgttg
atgtggtatcagcttccaccggaaactgaattgcctgttgtgttccgcacatatcagcgg
cttcttaatgaaggaaaagctccatctccagttccagtttatattgatgaaggacctata
gaactgtcaatgaattggcatgcagtgaaacattttgacctcagttactatcttatgctt
cttcatgctaatcaagaaattgatttcagtgctctaaagacgatgttctgtgcctttgct
tcaacaaacgatccccttgactaccacatgatctggcatcagcgagctgttttagaagcc
attggtgctttcagttctaatgatcttcatgtgctagacattagtttcatttctcagctt
ctatgtcttggtcaatgtcattgggctgtctatgtggtgcttcacatgcctcaccgtgaa
gattgtccttatttgcaagctgctcttataagggaaatactcttccagtactgtgaaact
tggagttctcaggacttgcagcggcaatttattgaggatctaggtattccatcagcatgg
ttgaacgaggctttggcaacgtattttaattattactttgaattccccaaagccctagaa
cactttttggagtgcggaaagtggcagaaagcgcacactatttttatgacttcagttgct
cattctctttttctatcagaggaacactcagaaatatggaggctaacagcttccatggag
gatcacaagtcagaaattgaagattgggatctgggagctggaatatatatatctttttat
ttgttgagaagttctttgcaggaggacaatgacgctatgaatcaagtagacactctagaa
aacaaagacaatgcttgtgcagacttcatccgttggttaaacaactctttggctgtttgg
actagcagattgcctgtcaaagcgagggtagtttattcgaagatggctgaggagatatgc
aatttgttgctttctgatagcggtggaagttcatcaaatgaggttcagctaagctgctac
gataccatattcaaggcacccatacctgaagatactcgtgcataccatttgcaggatgct
gtgtctctttttacatcttacctttccgaggtgctgtcatag
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