Solanum dulcamara (climbing nightshade): 129894394
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Entry
129894394 CDS
T09577
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul04120
Ubiquitin mediated proteolysis
sdul04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
129894394
04120 Ubiquitin mediated proteolysis
129894394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sdul04121
]
129894394
Enzymes [BR:
sdul01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129894394
Ubiquitin system [BR:
sdul04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
129894394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
zf-RING_Vps41
zf-RING_5
zf-RING_11
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
129894394
NCBI-ProteinID:
XP_055826041
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All DBs
Position
7:14294956..14302173
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AA seq
530 aa
AA seq
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MMRLQTYAGLSLIATLAVIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVVMCILWQL
TKKIFLGPLREAEVERLNEQSWRELMEILFAITIFRQDFSVTFLAMVTALLLIKGLHWLA
QKRVEYIETTPTVTRLSHIRIVSFLGFLLFIDSLFLYDSMNYLIQTRQASVSLFFAFEYM
ILATTTVSTFVKYVFYISDMLMEGQWENKPVYTFYLELIRDLLHLSLYLCFFMVIFMNYG
VPLHLIRELYETFRNFKIRVADYVRYRKITSNMNDRFPDATPEELNASDATCIICREEMT
TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPTENGTNVVGSQPDVQQGPGSSSASA
SQSSQANTTPSNNVSQHQARIQAAAAAAAIYQKSFVYPSVPTLAWSPGYAPVPPSHSPVG
SSANVLSDGERALNVQSPHDQLANMPFAQYPQSSFLPFQYPGANNLGIPKAQLEAHKILL
QQQIEVLQTQLKLLEHPNTQKKADDLGISDSKGKAISSESSRGQVEGAEI
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggttacaaacctatgcggggcttagcctaatagctacactggctgttatttat
catgcctttaatagcagaggacaattttatccagcaatggtttatctgtcaacttccaag
attagtttggtgcttcttctcaatatgggtcttgttgtcatgtgcattttgtggcagttg
actaagaaaatcttccttggtccccttcgagaggctgaggtggagaggctgaacgagcag
tcttggcgggaactcatggaaatactttttgccatcacaattttccggcaggacttctct
gttacctttcttgcaatggtaacggctctcttgcttatcaagggtttgcactggttggct
caaaagagagttgagtacattgaaacgactcctactgttactaggttgtcccacattcgc
atagtctccttcctgggttttctcctcttcatagacagtctctttttgtacgactccatg
aactatttgatacagacaagacaggcatctgtttctctcttctttgcatttgagtacatg
atacttgcaacaacaactgtctcaacttttgtaaaatatgtcttctacataagtgacatg
cttatggaaggacaatgggagaataagcctgtctatactttctacttagaacttatccga
gacttgctacacttgtctctgtacttgtgcttcttcatggtgattttcatgaactatggc
gtgcccctgcatttgattcgggagctttatgagacattccgcaacttcaagattcgagtt
gccgattatgtacgttatcggaagattacttcaaatatgaatgaccgttttccagatgct
acaccagaagagctcaatgcaagtgatgctacctgcatcatttgtcgtgaggagatgacc
actgctaagaaacttatttgtgggcatctgtttcatgtgcattgcctccgctcatggcta
gaacgtcaacatacctgtcctacctgcagagctcttgttgtgccaactgaaaacgggaca
aatgtggtaggatcacaaccagatgtgcaacaaggccctggatcaagttcagcaagtgca
tctcagagttcgcaagcaaacaccacgccaagtaataatgttagccagcaccaagctaga
atccaagctgcagcagcagcagcagcaatttatcagaagtcttttgtttatccttctgta
ccaacactagcgtggtctcctggatatgctccagttcctccgtcccatagtccagtgggc
agttctgccaatgtgctctcagatggggaacgggcattgaatgtacaatcaccacacgat
caattagcaaatatgccctttgctcaatatccacaatctagttttctccctttccaatat
ccaggtgctaacaaccttggtattccaaaggctcaacttgaggcccataagatactttta
cagcaacaaattgaggttctgcaaacccagctcaagcttttagagcatccaaacacacaa
aaaaaagcagatgatttaggaatttctgacagtaaagggaaagcaatttcatcagagagt
tctcgaggacaagtcgaaggtgcagaaatatga
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