Solanum dulcamara (climbing nightshade): 129895501
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Entry
129895501 CDS
T09577
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
129895501
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129895501
03009 Ribosome biogenesis [BR:
sdul03009
]
129895501
04131 Membrane trafficking [BR:
sdul04131
]
129895501
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sdul04147
]
129895501
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
129895501
Ribosome biogenesis [BR:
sdul03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
129895501
Membrane trafficking [BR:
sdul04131
]
SNARE
SNARE associated proteins
Others
129895501
Autophagy
Aggrephagy
Other aggrephagy associated proteins
129895501
Exosome [BR:
sdul04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
129895501
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_33
AAA_2
AAA_5
AAA_22
AAA_14
NPHP3_N
TIP49
AAA_18
RNA_helicase
AAA_17
AAA_28
Mg_chelatase
nSTAND3
IstB_IS21
ABC_tran
AAA_lid_PRS2_C
Viral_helicase1
ATPase_2
AAA_7
Vps4_C
Parvo_NS1
TsaE
NACHT
NB-ARC
DUF815
RCF1-5-like_lid
Motif
Other DBs
NCBI-GeneID:
129895501
NCBI-ProteinID:
XP_055827199
LinkDB
All DBs
Position
7:9778564..9782709
Genome browser
AA seq
810 aa
AA seq
DB search
MADPNSSTSDSKNNKKDFSTAILERKKSPNRLIVDEAINDDNSVVSMHPAKMDELQLFRG
DTVLLKGKKRKDTVCVVLANDQCEEHKIRLNKVVRANLGIRLGDVVSIHQCPDVKYAKRV
HILPIDDTIEGMTGNLFDAYLKPYFLESYRPVRKGDLFVVRGGMRSVEFKVVETEPGEYC
VVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGV
KPPKGILLFGPPGSGKTLIGRAVANETGAFFFLINGPEIMSKLAGESEGNLRKAFEEAEK
NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRSHVIVMGATNRPNSIDP
ALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLDDNVDLERVARDTHGYVGSDLAALC
TEAALQCIREKMDVIDLEDETIDAEVLNSMSVTNEHFQTALGASNPSALRETVVEVPNTS
WADIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC
QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGNSVGDAGG
AADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQ
IFKACLRKSPVAKDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIERERKRSE
NPEAMDEDDTDEVAEIKAAHFEESMKYARRSVSDADIRKYQIFAQTLQQSRGLGTEFKFA
EHAANATETGAAADPFTSVNAAGDDDDLYS
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atggcggacccgaattcttccacttccgattcgaaaaacaataaaaaggatttttcgact
gcaattttggagaggaagaaatcccctaatcgccttattgttgatgaggccataaatgat
gataattcagtggtatctatgcaccctgctaaaatggatgagctccaactgtttagagga
gatactgtcttactaaagggtaaaaaacgaaaggatactgtttgtgttgtccttgcaaat
gaccaatgtgaagaacataagatcagattgaacaaagtcgttcgagcaaatcttgggatt
cgacttggggatgttgtatctatacaccagtgtcctgatgttaagtatgccaagcgtgtt
catattcttccaattgatgatacaattgaggggatgactggcaacctgtttgatgcctac
ttgaagccgtacttcttggagtcttaccgccctgtgaggaagggtgatctcttcgtagtt
agaggaggtatgcgcagtgttgaatttaaagtggttgagacggagcctggagaatattgt
gttgtggcacctgatacagagatcttttgcgagggagaaccaatcaagcgtgaagatgag
gagaggctaaatgaagttggatatgatgatgttgggggtgtgaggaagcaaatggctcag
attcgtgagctcgttgaactccctctgaggcatccacagttgttcaagtcgattggtgtg
aaaccaccaaaaggtattctcctgtttggtcctcccggatcggggaaaaccctgattgga
agagctgtggcaaatgaaactggtgcttttttctttttgattaatgggcctgaaattatg
tccaaattggctggtgagagtgagggtaacttgaggaaggcatttgaggaagccgaaaag
aatgcgccgtctatcatatttattgatgagttagattcaattgctccaaagagagaaaag
acacacggtgaagttgagcggcgaatagtttcccaacttctgacattaatggatgggctc
aagtctcgatctcatgtgattgtcatgggggctactaacagaccaaacagtattgatcct
gctctcagaagatttggaagatttgatcgggagattgacattggcgtacccgatgaagta
gggcggctggagatcctacggattcatactaaaaatatgaagctcgatgataatgttgat
ctagagagggttgcaagagacacacatggttatgtcggatctgatcttgctgccttgtgc
actgaggctgcgctgcagtgtatcagggagaaaatggatgttattgacttggaggatgag
accattgatgctgaagtgttaaattcaatgtctgtgactaatgagcattttcaaactgct
cttggtgcttcaaatccatcagcattacgagaaacagttgtggaggttcccaacacctct
tgggcggatattggggggctggaaaatgtcaagcgggaacttcaagagactgttcagtat
ccggttgagcatcctgagaagtttgaaaagtttggaatgtcaccttctaaaggggtactt
ttctatggaccacctggttgtggcaaaactttacttgccaaagctattgcaaatgagtgt
caggctaattttataagtgtgaaaggaccggagttacttacaatgtggtttggagaaagt
gaagcaaatgttcgggaaatatttgacaaggcacggcagtctgctccatgtgtactgttc
tttgatgaacttgattccattgctacacagagggggaattccgtgggagatgctggtggt
gctgctgatagagtactcaatcaattgttgaccgagatggatggaatgacagcaaagaaa
acagttttcattattggggcaacaaataggccagacattattgaccctgcattgctcaga
ccaggtcgtctagaccaactaatttacatccccctcccggatgaagcttcccgtcttcaa
atcttcaaagcatgtttgcggaagtcccctgtcgcaaaggacgtggatctgtcagctcta
gcacggtatacacatggttttagtggtgcagacataactgagatttgtcagcgagcatgc
aaatatgccattagggaaaacattgaaaaggatattgagagagagaggaagaggagcgag
aatcctgaagccatggatgaagatgacactgatgaagtggctgaaataaaggctgcacac
tttgaggagtccatgaaatatgctcgaagaagtgtgagtgatgctgacattaggaagtac
cagatttttgctcaaacattacagcaatcacgcggacttggaactgagttcaaatttgca
gagcacgcagctaatgctacagaaacaggggcagcagccgacccattcacttctgttaat
gctgctggagacgacgacgacttgtacagttaa
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