Solanum dulcamara (climbing nightshade): 129895870
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Entry
129895870 CDS
T09577
Name
(RefSeq) E3 ubiquitin-protein ligase RING1-like
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sdul04131
]
129895870
04121 Ubiquitin system [BR:
sdul04121
]
129895870
Enzymes [BR:
sdul01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129895870
Membrane trafficking [BR:
sdul04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
129895870
Ubiquitin system [BR:
sdul04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
129895870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
Zn_ribbon_19
zf-C3HC4_2
zf-RING_11
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-ANAPC11
zf-Nse
zf-C3HC4_3
zf-RING_5
zf-RING_16
zf-RING_10
RPA43_OB
Prok-RING_1
zf-RING-like
Anti-TRAP
zf-HC5HC2H
zf-RING_Vps41
Zf_IFT144_1st
DZR
DUF7129
Motif
Other DBs
NCBI-GeneID:
129895870
NCBI-ProteinID:
XP_055827619
LinkDB
All DBs
Position
7:complement(12208855..12211855)
Genome browser
AA seq
380 aa
AA seq
DB search
MSSAGAVGGGGAAGNQPQNYHCYQCEQTVTITTSPNSELSCPNCNGTFLEESETAPPSNP
NPDSHPFFSTATNDDLPFGGGFPIVFSSNAASPADGSVGFNDLSALFGGMAGGSTALPGR
SPNQFDPFAFLNNYFSTMRGGNIQLIFENHPGGEGGGAGGDFRIPGNLGDYFLGPGLEQL
IQQLAENDPNRHGTPPAAKSAVAALPDIKINEELLDSDSSQCAVCKDTFEVGMEAKQIPC
KHIYHKDCIMPWLELHNSCPVCRYELPTDDPDYENRKTSQQHTANTSNNNTNNNNTGGMF
GGSEGGENQENSQIPSTGERRLRIPLQWLFRGLGSPAETSNSGGASNGANNRNNNNTSNN
APRGESNPDSGGQPRQEDLD
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcggccggagcagtaggtggcggaggcgctgccggaaatcaaccacagaattac
cattgttaccaatgtgaacagacagttaccattacgacatcaccaaattctgagctctca
tgccctaattgcaacggtacgtttctagaggaatcggaaaccgcaccaccttccaaccca
aatcctgatagtcatccatttttctccaccgccactaacgatgacctacctttcggcggt
ggctttccgattgttttctcttcaaacgctgcttcccctgccgatggttctgtcggtttt
aatgatctttccgctctatttggtggtatggcgggtggttccactgccttacccggtcga
tcccccaatcaatttgatcctttcgctttcctaaacaactatttcagtactatgagaggt
gggaatattcaattaatcttcgagaaccatcccggaggagaaggaggcggagctggtggt
gattttaggattccggggaatcttggagactattttcttgggcctgggcttgagcaattg
atccagcagcttgcggaaaatgatccaaatcgtcatggtacacctccggctgcaaagtcg
gctgttgctgcgcttccagatattaagatcaatgaggagttgttggattctgattcatct
caatgtgcagtttgtaaagatacttttgaagtcggcatggaggcgaagcagataccttgc
aaacatatataccataaggattgtataatgccatggctggagttgcacaattcttgccca
gtgtgtcgctatgagctgcctactgatgatcctgattatgagaataggaaaacatcacag
cagcatactgccaatactagtaataataataccaacaacaacaacactggtgggatgttt
gggggttcagaaggtggggaaaatcaggagaattctcagatacctagtacaggggagagg
aggcttaggataccattgcaatggcttttcaggggacttggatcacctgctgagacgagc
aacagcggaggagcaagtaatggtgctaacaatcgcaacaacaacaatacgagcaacaat
gctcctcgtggggagtctaatccggattctggagggcaaccgaggcaggaggatctcgat
taa
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integrated database retrieval system
