Solanum dulcamara (climbing nightshade): 129895873
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Entry
129895873 CDS
T09577
Name
(RefSeq) clathrin heavy chain 1-like
KO
K04646
clathrin heavy chain
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul04142
Lysosome
sdul04144
Endocytosis
sdul05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
129895873
04142 Lysosome
129895873
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
129895873
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sdul04131
]
129895873
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sdul04147
]
129895873
Membrane trafficking [BR:
sdul04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
129895873
Exosome [BR:
sdul04147
]
Exosomal proteins
Proteins found in most exosomes
129895873
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
IcmW
Motif
Other DBs
NCBI-GeneID:
129895873
NCBI-ProteinID:
XP_055827625
LinkDB
All DBs
Position
7:30895342..30908449
Genome browser
AA seq
1702 aa
AA seq
DB search
MAAANAPITMKEAITLSSIGVNPQFITFTNVTMESDKYICVRETSPQNSVVIIDMNMPMQ
PLRRPITADSALMNPNSRILALKAQVPGTAQDHLQIFNIEAKQKMKSHQMPEQVVFWKWI
TPQILGIVTQTSVYHWPIEGDTEPIKMFDRTANLANNQIINYRCDPSEKWLVLIGIAPGS
PERPQLVKGNMQLYSVDQQRSQSLEAHAASFASFRVPGSDRDSILISFATKSLNAGQVIS
KLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVSMQISHKYSLVYVITKLGLLFVYDL
ETATAVYRNRISPDPIFLTAEASSIGGFYAINRRGQVLLATVNEATIIPFVSGQLNNLEL
AVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGILRTSDTVAKFQSVPVQ
PGQTPPLLQYFGTLLTKGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLV
KTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRSDPQ
GAVNFALMMSQMEGGCPVDYNTITDLFLQRNMIREATAFLLDVLKPNLPEHGFLQTKVLE
INLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYVRALQHYTELPDIKRVIVNTHAI
EPQALVEFFGTVSREWALECMKDLLVINIKGNLQIIVQVAKEYCEQLGVDACIKLFEQFK
SYDGLYFFLGSYLSSSEDPDIHFKYVEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEA
KLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPE
DFIKGLILSVRSLLPVEPLVDECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDS
NNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARY
VVERMDGDLWEKVLNPENEFRRQLIDQVVSTALPESKSPEQVSATVKAFMTADLPHELIE
LLEKIVLQNSAFSGNFNLQNLLILTAIKADSSRVMDYINRLDNFDGPAVGEVAVEAQLYE
EAFAIFKKFNLNVQAANVLLDNIHDINRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIE
SFIRADDTTQFLDVIRAAEDADVYHDLVKYLLMVRQKTKEPKVDSELIYAYAKIDRLSDI
EEFILMPNVANLPNVGDRLYDEALYEAAKIIFAFISNWAKLAITLVKLNQFQGAVDAARK
ANSSKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGCFNELISLMESG
LGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYI
QYDEFDNAATTVMNHSPDAWDHMQFKDIAVKVANVELYYKAVHFYLQEHPDLINDLLNVL
ALRVDHTRVVDIMRKAGHLRLVKPYMIAVQSNNVSAVNEALNEIYVEEEDYDRLRESVDL
HDSFDQIGLAQKIEKHELLEMRRVAAYIYKRAGRWKQSIALSKKDNLYKDAMETASQSGD
RELAEELLVYFIEQGKKECFASCLFVCYDLIRPDVALELAWMNNMIDFAFPYLLQFIREY
TGKVDELIKDKIEAQSEAKAKENEEKDVMKQQNMYAQLLPLALPAPPMPGMGGGFAPSQP
PPMGGMGMPPMPPFGMPPMGPY
NT seq
5109 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgctaatgctccgatcacaatgaaagaggccattacattatcaagtataggg
gtcaacccgcagttcatcactttcacaaatgtaaccatggaatcagacaagtatatttgt
gttcgggagacatcaccacaaaatagtgtggtgattattgatatgaatatgccaatgcag
cctttgcgccgccctattactgcagactctgctcttatgaatcctaattccagaattttg
gctctaaaagctcaagtaccaggaactgctcaagatcacttacaaattttcaatattgag
gcaaagcagaaaatgaagtcacatcagatgcctgagcaggttgttttctggaagtggatt
accccacagattttaggtatcgtcacacaaacgtcagtctatcattggccaattgaaggt
gatactgagcctataaagatgtttgatagaacagccaatctagccaataatcaaataatc
aattatcgttgcgatccttcagagaaatggttggttttgatcggtattgccccaggttcg
ccagagaggccccaactcgtcaaaggaaatatgcaattatattcagtggatcagcagcga
agtcaatctctagaggcacacgctgcatcatttgcatcattcagagtacctggaagtgat
agggattccatactcatttcctttgccacgaaatccttgaatgctggacaggttatatca
aaattgcatgtcattgagctgggagctcagccagggaaaccttcatttacgaaaaaacag
gcggatcttttcttccctccagattttgctgatgatttcccagtttccatgcagatatct
cacaagtatagtttagtttatgtcatcacaaagcttgggcttctttttgtctacgacctg
gaaacagctactgcggtatacagaaataggattagcccagaccctattttcctgacagct
gaagcttcgtcgattggtggtttctatgccatcaacaggcgaggccaagtgttgctagcc
acagtaaatgaagcaactattataccttttgtcagtggccaattgaacaatctggagctt
gctgtcaatcttgccaaaagaggaaaccttcccggtgctgagaatttggttgtccagcgc
ttccaagaattgtttgctcaaaccaagtacaaagaggctgctgagcttgctgcggaatca
cctcagggcatactccgtacgtctgatactgttgccaaatttcagagcgttcctgttcaa
ccagggcaaacacctcctcttttgcagtactttgggacacttttgacaaaagggaagctc
aatgcttttgagtcattggaactgtcacgccttgttgtcaaccaaaataagaagaacctt
ttggagaactggttagctgaggataagctggagtgcagtgaggaacttggcgaccttgtg
aagactgttgataatgatctcgccttgaagatatacatcaaagcaagagcaactccaaaa
gttgttgctgctttcgctgagcgcagggagtttgacaagattctgatatattccaagcag
gttggctatactcctgactatctgttcctcctgcaaacaattcttcgatctgatcctcag
ggagctgttaacttcgcactcatgatgtcccaaatggagggtggttgtccagttgattat
aatacaatcactgacctttttctacagaggaacatgatccgcgaggcaacagcatttttg
ttggatgttctgaaacctaaccttccagaacatggtttcttgcagactaaggtattggaa
atcaatcttgtgactttccccaatgtagcagatgctatattagcaaacggaatgttcagt
cactatgatcgacctcgaattgctcaactttgtgaaaaagctggtctatacgtgcgggct
ctgcagcactatactgaactccctgatattaagcgtgtcattgtgaacacacatgcaatt
gagcctcaggctttggttgagttctttgggactgtttcacgtgaatgggctctcgaatgc
atgaaggacctgctagtgatcaatatcaaaggcaaccttcaaataattgttcaggtagcg
aaagagtactgtgagcagttgggtgttgatgcctgtataaagctttttgagcaattcaag
tcttatgatgggttgtacttcttcttgggatcatatttgagttccagtgaggatcctgat
attcacttcaagtatgttgaggctgctgccaagactggacaaataaaagaagttgagcgt
gtgacaagagaatctaacttttatgaccctgaaaagacgaagaacttcttgatggaagcc
aaacttcctgatgctcggcctctaattaatgtttgtgaccgttttggttttgttcctgat
ctcacacactacctctataccaataacatgctacggtatattgaaggttatgtccaaaag
gtcaacccaggaaatgctcctttagttgtgggacagctattggatgatgagtgtcctgag
gattttattaaaggcttgatcctttctgttcgttctctgctacctgttgagccccttgtg
gatgaatgtgaaaagaggaaccgcctccgactgcttactcagttcttggagcatcttgtg
agtgaaggaagccaagatgtgcatgtacacaatgctctgggtaagatcatcatagatagc
aacaataacccagagcacttcctgacaaccaacccatactatgattcacgtgttgtgggt
aaatattgtgagaagcgcgatcctacccttgctgttgttgcatataggagaggacaatgt
gatgacgaacttattaatgtaaccaacaagaactctttgttcaaattgcaagccaggtat
gtcgttgagaggatggatggtgacctttgggagaaagttcttaaccctgaaaatgagttc
agaaggcagcttatcgatcaagttgtctccactgctctgcctgagagcaaaagcccagaa
caagtttctgctactgttaaagctttcatgactgccgatcttccacatgaactgattgag
cttcttgaaaagattgtcctccagaactctgcattcagtgggaactttaatctgcaaaac
ttgctcatcttgacagccattaaagctgattcatctagagtcatggattatatcaacagg
cttgataattttgatggacctgcagtaggagaggtagctgtagaagcccaactttatgaa
gaagcttttgcaatcttcaagaagttcaatttaaatgtccaggctgccaatgttctgcta
gataatattcatgatataaatcgtgctgtcgagtttgccttccgagttgaagaagatgct
gtttggagccaagtggctaaagctcaactgagagaaggattagtcagtgatgctattgag
tcatttattcgtgcagatgataccacccaatttttggatgtcattcgtgctgcagaggat
gctgatgtttaccatgacttggtgaagtatctgctgatggtaaggcaaaagacaaaggag
cccaaggttgacagtgaactaatatatgcatatgctaaaatagatcgattgagtgacatt
gaagagtttattcttatgccaaatgttgccaatctaccgaatgttggtgaccggttgtat
gatgaagccttatatgaggctgcaaagatcatatttgcttttatttctaactgggccaaa
ttggctatcacacttgtgaagctaaatcaatttcaaggtgctgtagatgctgcacgcaaa
gcaaatagttcaaaaacgtggaaagaagtctgctttgcttgtgtcgacgctgaagagttc
cgcttagcccagatttgtgggcttaacattatagttcaggtagatgatctggaggaagtg
agtgaatattaccaaaacagaggatgtttcaatgaattgatctcccttatggaaagtggg
cttggtttggagcgagcccatatgggtatcttcacagaacttggtgtcctttatgccaga
taccgttatgagaagctcatggaacatataaaattattttccacccgtctcaacattccc
aagcttattcgtgcctgtgatgagcagcaacactggaaagaactaacttatttgtatatc
caatatgatgaatttgacaatgctgccactaccgtcatgaatcattctccagatgcttgg
gatcatatgcagttcaaagacattgctgtcaaagttgctaatgtggagctttattacaag
gccgtccacttttatttgcaagaacatccggatctcatcaatgatcttcttaatgttctt
gcacttagggtggaccacacccgtgtagtcgacataatgagaaaggctggtcatcttcgc
ctagtgaagccttacatgatcgctgttcagagtaacaatgtttctgctgtaaatgaggcc
cttaatgagatatatgttgaagaggaagattatgatagattacgcgaatcggtagatttg
catgatagctttgaccagattggtcttgcacagaagatagagaaacacgagcttcttgag
atgaggcgtgttgctgcttatatctataaaagagctggtcggtggaaacaatccattgct
ctgtcgaagaaagataatctttacaaagatgcaatggagactgcctcacaatctggggat
cgtgagcttgctgaagagttgcttgtttacttcattgaacagggaaagaaagaatgcttc
gcgtcgtgtctgtttgtttgttatgatttgattcgcccggatgttgcccttgagctagcg
tggatgaataatatgatcgactttgcattcccttacttgttacagtttattcgtgaatat
accggcaaggttgatgagctgataaaagataaaatagaggctcaaagtgaagcaaaagcc
aaagagaatgaagagaaggacgttatgaagcagcagaatatgtatgcgcagttgctgcct
ctggctttgcctgctccaccaatgccgggtatgggaggaggttttgctccatcccagcca
cctccaatgggtggaatgggaatgcctccgatgcctccatttggtatgccacccatgggt
ccctactaa
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