Solanum dulcamara (climbing nightshade): 129896001
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Entry
129896001 CDS
T09577
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul00040
Pentose and glucuronate interconversions
sdul01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
129896001
Enzymes [BR:
sdul01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
129896001
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
129896001
NCBI-ProteinID:
XP_055827784
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Position
7:complement(40957851..40965726)
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AA seq
543 aa
AA seq
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MFLLPLVVFYNSFIHFPKMHFKEEDMSSQSLFYRATTELQLVITIAPPRMRMRTGVLLFI
YLIASSFSPLITAHLNLTLHHQHPYPESVVHQVHRRINESRLLVETTLRDNKCQSSGNPI
DDCWQCDPNWAKNRQRLADCSIGFGQGAMGGKGGQIYIVRDSSDKDTVNPSPGTLRHAVV
QEEPLWIVFAADMVIKLKHELIVNNYKTIDGRGANVHITGSGCITLQYVSNVIIHNVHIY
NCVPSGNTNIRSSPTHVGWRGKSDGDGISIFGSHNIWIDHCALSHCTDGLIDAIMGSTAI
TISNNYFSHHDDVMLLGHDDQYLPDSGMQVTIAFNHFGEGLVQRMPRIRRGYVHVVNNDF
THWQMYAIGGSANPTINSQGNRYTAPDDPNLKEVTKREDTDIGQWDEWNWRTDGDTMVNG
AFFVPSGQGLSNQYAKAYSVDPKSALLINQLTANAGVLGGPRDNSISISPKGGTTEATGS
GHAESNSGDIDLVGMIFSGTGASAAPSLSTTTTPILLSFLIILTLYIIINHDGQLSIPLL
LLL
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgttcctattaccactagtagtattctataatagttttatacattttcccaaaatgcat
tttaaagaagaagatatgtcttcccagagtttgttttacagggcaacaacagaattacaa
ctggttatcactattgctcctccaaggatgaggatgaggactggcgttctcttatttatc
tacctcattgcctcctccttctcccctctaattacagcacacctcaatcttacccttcat
caccaacacccttatcctgaatctgtggttcaccaagtacacaggaggatcaatgagtcc
agactattggtggagacaactctaagagataacaaatgtcagagtagtggaaacccaata
gacgattgctggcaatgcgacccaaactgggccaaaaatcggcaaaggctagcagactgc
tccattggtttcggtcagggtgcaatgggtggtaaaggaggtcagatctacatagtacga
gactcctccgacaaagacaccgtcaacccatctccgggcactctccggcacgccgtcgtt
caagaggaacctctatggatcgtgttcgcagcagacatggtcataaagctaaaacacgag
ctcattgtgaacaactacaagaccatcgacgggcggggtgcaaatgttcacatcaccggc
agtgggtgtattacattacagtatgtgagcaatgtgattatacataatgttcatatttac
aattgtgtcccttcgggaaatactaacatacggtcgagccctacccatgttggctggaga
ggcaaatcggacggtgatgggatatccatctttggatctcataatatctggattgatcac
tgtgcattatctcattgtaccgacggcttgattgatgccatcatgggttctactgctatt
accatatccaataactactttagccatcatgatgatgttatgctcttgggacatgatgat
caatacttgcctgattcaggaatgcaggtgacaatagcgtttaatcatttcggagaaggt
ttagtacaaagaatgccaagaattagaagaggatatgtgcatgtggtgaacaacgatttc
acacactggcaaatgtatgcaattggtggaagtgctaatcctaccattaacagtcaaggc
aatcgatatactgctcctgatgatccaaatttgaaggaggtgacaaagcgggaggacacg
gacattgggcagtgggatgaatggaattggaggacggatggggacacaatggttaatggc
gcatttttcgtgccttcagggcaaggccttagcaaccaatatgctaaagcctacagcgtc
gatcccaaatccgcccttctcatcaaccagctcaccgccaatgctggtgtacttggtggc
cccagggacaacagcattagcatttcacccaaagggggcactaccgaagcaaccggcagc
ggtcatgccgagtccaatagcggtgatatcgacttggtcggaatgatattcagtggtact
ggtgcatctgcagcaccatcgctatcaacaacaaccaccccgatcttactttccttttta
attattctgactttgtacatcatcattaatcatgatggtcaattatcgataccattgtta
ctcttactatag
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