Solanum dulcamara (climbing nightshade): 129896003
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Entry
129896003 CDS
T09577
Name
(RefSeq) formamidopyrimidine-DNA glycosylase isoform X1
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
129896003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdul03400
]
129896003
Enzymes [BR:
sdul01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
129896003
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
129896003
DNA repair and recombination proteins [BR:
sdul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
129896003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
Fpg-like_C
Motif
Other DBs
NCBI-GeneID:
129896003
NCBI-ProteinID:
XP_055827788
LinkDB
All DBs
Position
7:complement(5206578..5212120)
Genome browser
AA seq
441 aa
AA seq
DB search
MPELPEVEAARRAIEDSCIGKKIVRSIIADDSKVIDGVSPIDFKASLEGKTIVAANRKGK
NMWIELDSPPFPTFQFGMAGAIYIKGVAVTKYKRSAVKDDDEWPSKYSKVFLELDDGLEL
SFTDKRRFARVRSLENPVSVPPISELGPDALLEPMTVDEFYKALSKKKIGIKALLLDQSF
ISGIGNWIADEVLYQARIHPMQSASSISKEDCATLLKCINEVIEKAVEVGADSSQYPTNW
IFHSREKKPGKAVVDGKKIEFITAGGRTSAFVPELQKNTGAESTKAAGKRQQGKVQKVEH
NDGDSQDEEPEIEETAAGKSKVKQRGINTKRTSTNKKSKESNSDNDENDSDEGLKKPSVK
AKQNRSSKGKGGVQKKKTGGTSPSAKRKLEESGDEEDTDDDDNEQDKDHKLSSKTQSKGK
KTTKRTAEPRQTRNKPSKKKK
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgccagagcttccagaggtagaggcagctcgaagagccattgaggacagctgcataggc
aagaagattgtgagatctatcatcgccgacgattccaaggtcatcgacggcgtgtctccc
atagatttcaaagcctctcttgagggaaaaaccatcgtagctgctaatcgcaaagggaaa
aacatgtggattgagctcgattcccctccttttcctactttccagttcggaatggcgggt
gctatatatatcaagggagttgcagttacaaaatataaacggtctgctgtaaaagatgat
gacgagtggccttccaagtattcaaaggttttccttgagttggacgatggtttggagctt
tcgtttacagataagaggcggtttgccagggttcgctcactggaaaatccggtttctgtt
cctccaatatctgagcttggtcctgatgcgctgttggagccaatgactgtagacgagttc
tataaagctttgagcaagaagaagattggcattaaggctttattacttgaccagagtttt
atatcaggaattggcaactggattgcagatgaagtgctatatcaggcaagaatccatcct
atgcagtctgcttcaagcatatccaaagaggactgtgcaacattgctgaagtgcattaat
gaggtcatcgaaaaagctgttgaagttggggcagatagtagtcagtatcctactaattgg
attttccattcccgggaaaagaaacctggcaaggccgttgttgatgggaagaaaatagaa
tttatcacggcaggtggcagaacatcagcctttgttccagagctacaaaagaatacggga
gctgaatctacaaaagcagcaggtaaacggcaacagggaaaagttcagaaagtcgagcat
aatgatggtgatagtcaagatgaagagccagaaattgaagagacagcagctgggaagtca
aaggtgaagcagcgtgggataaatactaagagaacttctactaacaagaagtcgaaggaa
agcaacagtgacaatgatgaaaacgatagtgatgaaggtctaaagaagccttctgtaaaa
gcaaaacaaaacaggagctccaagggaaaaggtggtgttcaaaagaagaaaactggagga
acaagtccgtctgcaaaaagaaaactagaggaaagtggtgatgaggaagacaccgatgat
gatgataatgaacaggataaggatcacaagctttctagtaaaacacaatcaaaggggaag
aagaccaccaagcgaacggctgaaccgaggcagactaggaataagccgtccaagaagaag
aaataa
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