KEGG   Solanum dulcamara (climbing nightshade): 129896079
Entry
129896079         CDS       T09577                                 
Name
(RefSeq) histone deacetylase 6-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
sdul  Solanum dulcamara (climbing nightshade)
Pathway
sdul03082  ATP-dependent chromatin remodeling
sdul03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:sdul00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    129896079
   03083 Polycomb repressive complex
    129896079
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:sdul03036]
    129896079
Enzymes [BR:sdul01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     129896079
Chromosome and associated proteins [BR:sdul03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     129896079
   HDAC complexes
    Sin3A-HDAC complex
     129896079
    BRAF-HDAC complex
     129896079
    REST complex
     129896079
    SHIP complex
     129896079
    MiDAC complex
     129896079
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     129896079
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    129896079
  Chromatin remodeling factors
   NuRD complex
    129896079
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 129896079
NCBI-ProteinID: XP_055827872
LinkDB
Position
7:complement(9988971..9992506)
AA seq 454 aa
MDYSVVEGGASLRSPGTDATNRRVSYFFDSSIGEYYYGQGHPMKPHRIHIAHNLICNYNL
QNKMEVIEPFPASKEDIGWFHSSDYVEFLSSVSPESLHDDYNSTQLKRFNLGSDCSDCPV
FYGLFDFCQASAGGSIGAAVKLNQKDADIAINWAGGLHHAKKSAASGFCYVNDIVLGILE
LLKVHKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGNIKDIGASTGKYY
ALNAPLKDGIDDESFRCLFRPVIQKAMEVYQPEAVVLQCGADSLAGDRLGLFNLSVQGHA
DCLRFLRSFNVPLMMLGGGGYTITNVARCWCYETAVAVGVEPDNDLPYSEFYGYFAPDYT
LKHEALPMKNKNPPRELEKIRNTLLEQLSRLPHVPSVPFQVTPSITEVPEEREKDMDQRA
KPGIHMNQDYDTDEEEKSNNRKFSNYYNYSNREN
NT seq 1365 nt   +upstreamnt  +downstreamnt
atggattactccgtcgtggagggtggcgcgtccctccgttcgccgggtaccgacgctaca
aatcgccgtgtttcttattttttcgactcttccattggcgaatattattacggccagggt
catccaatgaagcctcaccgtattcacattgcacacaatcttatttgcaactataacctt
caaaataaaatggaggtaattgaaccgtttccggcgagtaaggaggatattgggtggttt
cactcatcagactacgtcgagtttctatcttcagtttcgcccgagagtcttcatgatgat
tacaattccacccagcttaaacgcttcaatttaggttcggactgctcggactgccctgtt
ttttatgggctttttgatttttgtcaagcttcggctggtggctccattggagccgctgtt
aagcttaatcagaaagatgctgatatagccatcaattgggctggtgggttgcatcatgca
aagaaaagtgcagcttctggattttgttatgtgaatgatattgttcttgggattcttgaa
cttctcaaggttcacaagcgtgtactgtatatagacattgatgttcaccatggagatgga
gttgaggaggctttttacaccacagatcgggttatgacagtgtcttttcataagtttggg
gacttctttcctggtacagggaatatcaaagacattggtgccagtaccgggaagtactat
gccttaaatgcaccattgaaagatgggattgatgatgaaagtttccgttgtctattccgt
cctgttatccaaaaagcaatggaggtctatcaacctgaagctgttgttcttcaatgtggt
gctgattcactagccggagacaggttgggtttatttaacttgtctgtccaaggccatgca
gattgccttcgattcctcaggtcgttcaatgtccctttaatgatgttgggtggtggaggt
tatacgattacaaatgttgctcgctgctggtgctatgagacagcagttgcagttggagta
gagcctgataatgatttgccttacagtgagttttacgggtattttgcccctgattatact
cttaaacatgaagcattacccatgaagaataagaatccgccccgggaactggagaagatc
aggaacacgttgctggagcaactctcgcgtttaccccatgtacctagtgttccatttcaa
gtgacaccttccataacagaagttccagaagagcgagagaaagacatggatcaaagggct
aaaccaggaatacatatgaaccaggattatgatactgatgaagaggaaaagtcaaataac
agaaagtttagtaattactacaattactccaacagagagaactga

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