Solanum dulcamara (climbing nightshade): 129896094
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Entry
129896094 CDS
T09577
Name
(RefSeq) transcription initiation factor IIF subunit alpha isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
129896094
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdul03021
]
129896094
Transcription machinery [BR:
sdul03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
129896094
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DZR_2
Motif
Other DBs
NCBI-GeneID:
129896094
NCBI-ProteinID:
XP_055827896
LinkDB
All DBs
Position
1:1023240..1034199
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AA seq
537 aa
AA seq
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MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPVTRLIREYN
VRACSSNDKNHFIARFASGLPKFSKKKNDSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE
DETGQFQFHGHLEGAQSAQYYLLMMQGEELFAIPAGSWYNFSKVAQYKQLTLEEAEEKMK
NRRKTADGYQRWMMKAANNGPAAFGEVERFDDKESGSGGTRGRKKTSGDEDEGNASDHGD
EDEEEEAARKNRLGLNKRGIDDDEEGPRGGDLDLDDDDIEKGDDWEHEEIFTDDDEAVGN
DREDEDLAPEIPAPPEIKQDEDDEEEGEEEGGGLSKSGKELKKLLGKASGLNESDAEDDD
DDDDTEEDISPVLAPKPKEAPKEEPVETNSPLKPAASGSNRGTPTSKSAKTKRKANGDES
KPTNGAPLKKVKTETDAKPGKEETPSTAKSSSLPKGASPSSKTAPSPATGPVTEDEIRAV
LLQRKPVTTQDLVSQFKSRLKCKEDKAAFAEVLRKISKIQKTSSGSSYVVLRERTNQ
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatagatttgattctgaaaccttcatgtagcaggtgcggttcctcgtcggatctg
tatggaagctcatgtaagcacttgactctctgtttgtcttgtggaaaaaacatggctgag
acgcgtgataagtgctatgagtgtggaactccagttacgagattgattcgagagtataat
gttcgggcttgctccagcaatgacaagaatcatttcattgctagatttgcttcaggctta
cctaaattttcaaaaaagaagaatgacagtaaatggactttacaaaaagaaggtttgcaa
ggacgtcaagttacagatactttgcgggagaagtacaagaataaaccatggctattagag
gatgaaactggtcaatttcagttccatggtcatcttgagggagcacagtcagcacaatat
tatctactgatgatgcagggtgaagagttatttgctattcccgctggttcttggtataac
ttcagcaaagtagcccaatataagcaacttactctggaggaagcagaagagaaaatgaaa
aacagaagaaaaactgcagatgggtaccagagatggatgatgaaagcagcaaacaatgga
cctgctgccttcggtgaagtagaaagatttgatgacaaagaaagtggatctggtgggaca
agggggcgtaagaaaacttctggtgatgaggacgaaggcaatgcgtcagaccatggggat
gaagatgaggaagaagaggctgctaggaaaaacaggttgggactcaacaaaagaggcatt
gatgatgatgaagagggtcctagagggggcgatcttgacctcgatgatgatgatattgaa
aaaggggatgactgggagcatgaggagatttttacggatgatgatgaggctgttgggaat
gatcgtgaggatgaggatttggctcctgaaattcctgctcctccagagataaagcaggat
gaagatgacgaggaggaaggtgaagaagagggaggtggtttgagcaaatctggaaaggag
ttgaaaaagttgcttggaaaagccagtggattgaatgaatcagatgctgaggatgacgat
gatgatgatgatacagaagaggatatttcacctgtattagctcctaagccgaaggaagct
cctaaagaagagccggttgagaccaacagtcctttgaaaccagctgcttctggatccaac
cgtggaactccaacttcaaagtcagctaagactaaaagaaaagctaatggagatgagtca
aaaccaactaatggtgctcccttgaaaaaagtgaaaacagaaacggatgccaaacctggg
aaagaagaaaccccatctactgcaaagagcagttctcttccaaagggtgcatcaccctct
tccaaaactgctccaagtcctgccacaggtcctgttactgaagatgaaattagagctgtt
ctattgcagagaaaaccagtgaccacacaggatcttgtcagccaatttaaatctcgtttg
aaatgtaaagaggataaggctgcttttgctgaagtattgaggaagatctccaagatacag
aagacttcttcaggaagtagctatgtcgtgttacgagagaggacaaatcaatag
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