Solanum dulcamara (climbing nightshade): 129896178
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Entry
129896178 CDS
T09577
Name
(RefSeq) transcription initiation factor TFIID subunit 2 isoform X1
KO
K03128
transcription initiation factor TFIID subunit 2
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
129896178
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sdul01002
]
129896178
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdul03021
]
129896178
03036 Chromosome and associated proteins [BR:
sdul03036
]
129896178
Peptidases and inhibitors [BR:
sdul01002
]
Metallo peptidases
Family M1
129896178
Transcription machinery [BR:
sdul03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
129896178
Coactivators
SAGA/TFTC/STAGA complex
129896178
Chromosome and associated proteins [BR:
sdul03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
129896178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M1
HEAT_2
Motif
Other DBs
NCBI-GeneID:
129896178
NCBI-ProteinID:
XP_055827991
LinkDB
All DBs
Position
7:3043424..3057652
Genome browser
AA seq
1513 aa
AA seq
DB search
MAKARKGKSEEQKGDNSEAVVRHQKLCLSIDMEKRRIYGYTELDVVVPENGILGLHADNL
VIDSVTVDGEPTEFEVFPHYLALENGDRWCSVSSTTSAADASGSVYLSHLDRELLSNLLI
MCKKPAKHDIEKQEMHLENGVNSSAENNQNVKKVRIDYWVEKAETGIHFTGDVLHTDNQI
RRARCWFPCMDDNLQCCCYDLEFTVANNLVAVSTGSLLYQIWTKDVPARKTFVYKLSTPV
SARWISLAVAPFEILPDPNVTHLSHICLPADLTKLRHTIGFFHSAFSYYEDYLSASFPFG
SYTQVFISPEMAISSASIGASLSIFSSHFLFDGKVINKTIDTRIKLAYALARQWFGVYIT
PEVPNDDWLLDGLAGFLTDMFIKRFLGNNEARYRRYKANVAVCRADDSGATALSAVAASK
NLYGTQCIGLFGKIRSWKSVAILQMLEKQMGPESFRKILQQIVSRAQDVNRSLRTLSTKE
FRHLANKVGNLERPFLKEFFPRWVGSCGCPVLKMGFSYNKRKNMVELAILRECTARLDSS
DTMTNGKPDSEKLEGDGWPGMMSIRVHELDGMYDHPILPMTGEPWQLLEFQCHSRLAAKR
FQKTKKSSKPDGSDDNGDTVANVDMRATSDSPLLWLRADPELEYLAEIHLNQPVQMWINQ
LEKDRDVVAQAQAIATLEALPQLSFSVVNALNNFLSDSKAFWRNRIEAAFALAGTASEET
DWAGLTHLVAFYKTRRFDANIGLPKPNDFHDFQEYFVLEAIPHAIAMVRAADQKSPREAV
EFVLQLLKYNDNSGNPYSDVFWLAALVQSIGELEFGQQSIVYLSSLLKRVDRLLQFDRLM
PSYNGILTISCIRSLTQIALKLSEFVPLDRVIELINPFRTSKTLWKVRVEASRSLLDLEF
QRNGIDAALTLFIRYLDEEPTLRGQVKLGVHAMRLCQIRNESDFDSDVKGGTLVALLRLL
ESPTSFNNVILRHYLFCILQVLARRAPTLYGVPKDETLRMGHAAFCSNLKNIFADLVKQS
KPPECPLENLEDILDGSAIAEAPHEADAPPGNENAKGATSSVPDSLFVSEVWKDTEDALL
SNEITNTATGAIPDSLVVTEVQNEADSLNFRHGVMHPMGDLPLASSAALREEPVLPDNEQ
TKPMVSLLHETAVMSMGPPAADNLGIRDQGQPVINLGRDNPGISEPSREPDTVSASHGRK
KPVFKIKVKKTVTSSRAEDHENATMDKSQDGFRDVDRGASSSVSVDAPQRNVVEIMSSGG
NQFPEDVNSCHDVGSHVTASIGSAKVAVEVEELTKELQCTAESSKVSLGPQLDDHLSTGI
TRFDDPEAEPHKYASLQSLTMPNIPVHGKVKEKKRDRGKKRKLEGRKDDPEYLERKRLKK
EKKRKEKELTKILQDEAKASTSLESRRKNEQGGTKAETIKNDHKTSLVEQESREDEAEPR
QVMNGAEAKATSSGLSSRNEDIGAEGASLQLKPGGSSGVKLNVDRGDTSVNAAPPTSSHK
FKIRIKNRTLGKS
NT seq
4542 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaggctcgcaaagggaagagcgaagagcagaaaggggataattctgaagcagtc
gttcgtcatcagaaactatgtctctcaattgacatggaaaagcgtcgaatttacggttac
acagagcttgatgtagttgtaccagaaaatggaattttgggcttgcacgcggataatttg
gtgatagacagtgtaacagttgatggggaacctacagaatttgaagttttcccgcactat
ttagcattggaaaatggggatagatggtgctctgtatcatcaactacttcagctgctgat
gcgtctggttcagtttacttgtcacatctagatcgagaattgctatcaaatttgctgata
atgtgcaaaaaacctgcgaagcatgatattgaaaaacaggaaatgcatttagagaatggg
gtgaactcttcagctgaaaacaatcagaatgtgaagaaggtccgtattgattattgggta
gagaaagctgaaactggaatccactttactggtgacgttctacatactgacaaccaaatt
cggcgtgcacgatgctggttcccctgcatggatgacaatttacaatgttgctgctatgat
ttggaatttacagtggccaacaatcttgtggctgttagtactggaagcttactttatcag
atctggaccaaggatgttcctgcgcgtaaaacttttgtctacaaactaagtactcctgtt
agtgctcgatggatatccttggcagttgcaccatttgaaattcttcctgaccctaatgtt
actcatctctcacatatttgtctacctgctgacttaacaaaactgcggcacactatagga
ttttttcacagtgcttttagctactatgaggactacctttctgcatcatttccatttggg
tcatacacgcaagtttttatttctcctgagatggcaatatcttcagcaagtataggagcc
tccttgagcatcttcagttctcacttcctattcgatgggaaggtcattaataagaccata
gatacaaggattaaacttgcttatgcccttgcaagacaatggtttggagtgtatatcacc
ccagaagtgccaaatgatgattggttgttggatggtcttgctggtttcttgactgacatg
ttcatcaagagattccttggcaataatgaagcacgctataggagatacaaggctaacgtt
gctgtttgcagagcagacgatagtggtgcaactgccttaagtgctgttgctgcttcaaag
aatttgtatggcacccagtgtattggtttatttggaaaaattagatcttggaagtctgtt
gcgattctccaaatgttagaaaaacagatgggacctgagtcatttcgcaagattcttcag
caaattgtttcccgggctcaagatgtaaatcgatcgttgagaacccttagcacaaaagag
ttccggcaccttgccaacaaggtcggtaatcttgagcgcccatttcttaaagaattcttt
ccacgttgggtcggatcatgtggctgtccagtgctgaagatgggattctcctataacaaa
agaaagaatatggtcgagctagcaatattgagggaatgcacagctagactcgactcaagt
gatactatgactaatggtaagcctgactcagaaaagctagaaggtgatggctggcctggc
atgatgagcatacgggtgcatgagcttgatggcatgtacgaccatccaattctgcctatg
actggagaaccctggcagcttcttgaatttcagtgtcattctagacttgcagcaaaacgg
tttcaaaaaaccaaaaagagttctaaacccgatggttcagatgataatggtgacactgtg
gctaatgtagatatgcgtgcaacctctgattccccgttgttgtggctccgggcagatcct
gaattagagtatcttgccgaaattcatttaaatcaaccagtacagatgtggataaatcaa
ttggagaaggacagagatgtggttgctcaggcgcaggctatagcaacattagaagcatta
ccgcaactttctttttcagttgttaacgctctcaacaacttccttagtgactctaaggcc
ttttggaggaatcgaatagaggcggcgtttgctttggctggtacagcatcagaggaaact
gattgggctggcttgactcatcttgttgcattttataagactcgaagatttgatgccaat
attggacttcccaagccaaatgactttcatgatttccaggagtactttgtactagaggct
attccacatgctatagctatggttcgagcagctgaccagaaaagccctagggaagctgtt
gaatttgttctacaacttctgaagtacaacgacaacagtggaaacccctactctgatgtc
ttttggctcgctgcgttagtccagtccattggtgagcttgaatttggacagcagagcatt
gtctatttatcatcccttctcaagcgagttgatcggctcttgcaatttgacaggttgatg
ccaagttacaatggtattttgacaattagctgcatccgatctttgacccaaattgcacta
aagctgtcagagtttgttcctcttgatcgtgtcattgagctcattaatccattccgaact
tcgaagacactctggaaagttcgggttgaagcaagcagatcacttcttgatcttgagttc
cagcgcaatgggattgatgctgcattgacattgtttattagatatttggatgaagagcca
actttaagaggtcaagtgaagttaggtgtgcatgccatgcgtttatgtcagattagaaat
gaatctgattttgacagtgatgtgaagggtggaactctcgttgctttattgcgcctgctt
gagagcccaacctcgttcaacaatgttattctacgtcattacttgttctgcatcttacaa
gtccttgctcgaagagcaccgacactgtatggagtgccaaaagacgaaactttgaggatg
gggcatgcagcattttgcagcaatcttaagaatattttcgctgatcttgtcaaacagtct
aaacctcctgaatgtcctctggagaaccttgaagatatacttgatggttcagccattgca
gaagctcctcatgaagcagatgctcctccgggcaatgaaaatgcaaaaggtgctactagc
tcagtacctgatagtttatttgtatcagaggtctggaaagacacggaggatgctttattg
agtaatgaaattacaaacactgctactggcgctataccggatagtttggttgttacagag
gtccagaatgaggcagattcactgaattttaggcatggagtaatgcatccaatgggtgac
ctcccactcgctagttctgcggctcttagagaagaacctgtcttacctgacaatgagcaa
acaaagccaatggtgagcctgttacatgagactgcagttatgtccatgggccccccagca
gccgataaccttggaatccgtgatcaagggcagccagtaatcaatcttggacgagataat
ccaggaatttctgaaccttccagagaacctgatactgtttctgcaagtcatggaagaaag
aagcctgttttcaagattaaagtgaaaaaaactgtcacatcttctcgagccgaggatcat
gaaaatgcaacgatggacaaatctcaagatggttttcgtgatgttgaccgtggggcaagt
agctcagtttctgttgatgcacctcaaagaaatgttgttgaaataatgagcagtggtggt
aaccagttccctgaggatgtcaactcttgtcatgatgttggatctcatgttactgccagc
attggaagtgccaaagttgcagttgaagttgaagagctaacgaaggagttgcaatgcact
gccgagtcgagcaaagtttctttggggccacaacttgatgatcacttatcaacgggtatc
acgagatttgatgatcccgaggctgaaccacataaatatgcaagtttacaatcgctgact
atgcctaacattccagttcacggcaaagtgaaggaaaagaagagagacagaggaaagaaa
agaaagctggaggggcgcaaagatgatccagagtacttggagcgaaaaaggttaaagaag
gagaagaaacggaaggagaaggagttaacaaagatcttgcaagacgaggcaaaggcttca
acgtccttggagagtcggaggaagaacgagcagggaggcactaaagcagagacaatcaag
aatgatcataagacaagtttagtggagcaagaaagtagagaagatgaagctgaacccaga
caggtgatgaatggtgcagaagcaaaggcaacctcttcgggtttgtctagtaggaacgag
gatattggggctgaaggagcaagcttgcagttgaaacccgggggctctagtggggtgaag
ttaaacgtagatagaggcgatacgagtgtaaatgctgcgccacctacttcttcacataaa
tttaaaattaggattaaaaaccgaacgcttggtaaatcatga
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