Solanum dulcamara (climbing nightshade): 129896192
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Entry
129896192 CDS
T09577
Name
(RefSeq) probable pectate lyase P59
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul00040
Pentose and glucuronate interconversions
sdul01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
129896192
Enzymes [BR:
sdul01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
129896192
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Gene cluster
GFIT
Motif
Pfam:
Pec_lyase_N
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
129896192
NCBI-ProteinID:
XP_055828011
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Position
7:complement(9160622..9163459)
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AA seq
435 aa
AA seq
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MGFAKSNLFLFFVLVVLVVSIEAHIKEFDEVWKKRAEQAKKAARQAYHPNPKIVADHLNY
QVDKAIRGSNSRRRDLHRYSGKCMATNPVDQCWRCDPNWARNRMKLTDCVLGFGRKTTGG
KGGKIYVVMDNSDNDLVNPKPGTLRHAVIQPEPLWIIFAKNMEIRLNEELIMTSNKTIDA
RGRQVHIAHGGGLMLQFIHNVIISNLHIHDTKAGSGGLIRDSVSHYGYRSQSDGDGISIF
GSTNVWIDHISMSNCQDGLIDVVEGSTAITISNCHFTKHNDVMLFGASDTASGDSVMQIT
LAFNHFGHGLIQRMPRVRWGFVHAVNNDYTHWLMYAIGGSMHPTILSQGNRFIAPPNPNA
KEVTKRDYAPESVWKNWVWKSQGDLMMNGAFFVESGDPKHAFLKGPDMINSKPGSFVSSL
TRFSGSLKCIEGRPC
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgggattcgcaaagagtaatttgtttttattctttgttttggttgttctagttgttagc
attgaggcacatattaaggagtttgatgaggtgtggaagaagcgagccgagcaagcaaag
aaggccgctcgtcaggcctatcatcctaatcctaagattgttgctgaccatcttaactac
caagttgacaaggccatacgaggcagcaatagtagaagaagagacttgcacaggtacagc
ggaaaatgcatggctactaatcctgtcgaccagtgctggaggtgtgatccaaactgggct
cggaaccgcatgaaactaacagattgcgtccttggctttggccgcaagacgacgggaggc
aaaggtggaaaaatctatgtagtaatggataattcggacaacgacttagttaatcctaag
ccgggcacattgcgccacgctgtcatccagccggagccactttggattatatttgctaag
aacatggaaattaggcttaacgaggagcttatcatgactagcaacaagaccattgacgcc
cgaggaaggcaagtacacattgctcatggtggtggccttatgttacagttcatacacaat
gtgattattagtaaccttcacattcatgatactaaggctggtagtggtggcttaattaga
gactctgtcagtcattatggttatcgatcacaaagtgatggtgatggcatttcaatcttt
ggatcaacaaatgtttggatcgatcacatttccatgtccaattgtcaggatggtctcatt
gatgttgttgagggttccactgccattaccatttccaattgccatttcaccaaacataat
gatgtcatgttgtttggtgccagtgataccgcctcaggggactctgttatgcaaataaca
cttgcattcaatcactttgggcacggattgatacagaggatgccaagagtaagatgggga
tttgttcatgctgtcaataatgattacacacattggctaatgtatgccattggaggaagc
atgcatcccaccatccttagccagggcaatcgtttcatcgctcctccaaatcctaatgcc
aaagaggtgaccaaaagggattatgcacccgagagcgtgtggaagaattgggtgtggaaa
tcacagggagatcttatgatgaacggggcattcttcgtagaatcaggagatccaaaacat
gcatttttgaaaggtcccgatatgatcaactccaagccaggatcatttgtgagcagcctg
acgcgattttcaggctctctcaaatgcattgaggggaggccatgttag
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