Solanum dulcamara (climbing nightshade): 129896195
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Entry
129896195 CDS
T09577
Name
(RefSeq) uncharacterized protein LOC129896195 isoform X1
KO
K20476
RAB6A-GEF complex partner protein 1
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sdul04131
]
129896195
Membrane trafficking [BR:
sdul04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Rab associated proteins
129896195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIC1
Beta-prop_RIG_2nd
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_Prp19
WDR55
Beta-prop_IFT140_1st
Beta-prop_VPS8
Beta-prop_TEP1_2nd
Beta-prop_HPS5
Beta-prop_IFT122_1st
Motif
Other DBs
NCBI-GeneID:
129896195
NCBI-ProteinID:
XP_055828015
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All DBs
Position
7:79078780..79098248
Genome browser
AA seq
1139 aa
AA seq
DB search
MYMAYGWPQVIPMESGPCPSSQQILYLKVINRLLLVVFPTHLELWSSSQHRVRLGKYRRS
SDSIQKKGENLRAVWSPDTKLIAVLTSSFYLHILKVQFTERKIQIGGKQPTGLFLASITL
LLNEHVPFANGNLTMSNVVCDKKHMIVGLSDGSLYNISWKGEFCGAFDAFDLDFQSHDGS
GVPKLASSLENGFASGGSLSSSKFSHHLSKNSAVIHLEFSLPLRLLVVLFSDGQLVLCSV
SKKGLKQMESIKAEKKLGSGDAVCSAVASDQQLLAVGTRRGVVELYDIAESASLLRSVSL
YDWGYSVEDTGAVSCVAWTPDNSAFAVGWKLRGLTVWSVSGCRLMSTIRQIGLSSASSPV
VKRNQECKYEPMMSGTSLMNWDEYGYRLYAIEEGSSERIVAFSFGKYCLNRGVSGTTYVR
QVIYGEDRLLVVQSEDTDELKLLHLSLPVSYISQNWPVQHVAASKDGMYLAAAGLHGLIL
YDIRLKKWRVFGDVTQEQKIQCRGLLWLGKIVVVCNYDDSSDGYELLFYPRYHLDQSSLL
CRKPLLTKPIVMDVYQDYLLVTYRPFDVHIYHVKLSGELTPSSSPNLQLSTVRELSIMTA
KSHPASMRFIPDQLPREGVARNGGLSTSLDLSVREPTRCLILRTNGELSLLDLDEGRERT
LTDSVELFWVTCGQSEEKASLIEEVSWLDYGHRGMQVWYPSPGADVFKQEDFLQLDPELE
FDREVYPLGLLPNDGVVVGVSQRMSFSACTEFSCFEPSPQAQTILHCLLRHLLQRDKKEE
ALRLAQLSAEKPHFSHCLEWLLFTVFEADISGSKNQSVIPNHSTNSSLLDKTCDLIKNFP
EYFDVVVSVARKTDGRHWADLFAAAGRSTELFEECFQSRWYRTAACYILVIAKLESPAVS
QYCALRLLQVITCRCNESWLLIHATLDESLYELAGELVRFLLRSGREYEPTTTDSEKLSP
RFFGYFLFPSSYRRQTLESKGSFKEPSAHVASVKNILESHASYLMSGKELSKLVAFVKGT
QFDLVEYLQRERYGSARLDNFASGFELIGQKLQMGTLQSRLDAEFLLSHMCSVKFKEWIV
VLATLLRRSEVLFDLFQHDLRLWKAYSITLKTHPSFVEYHDLLESLDEKLSSTSNSEET
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgtatatggcatatggatggccacaggtcatccctatggaatcagggccatgcccttct
tcgcagcaaattttgtacctcaaagtcatcaatcgtttattgcttgtggttttccctact
catcttgaactatggtcctcctcacagcatagagtgagattgggcaagtacaggagaagc
tcggattcgattcagaagaaaggcgagaatttgcgagctgtttggagtcctgatactaaa
ttgattgcagttcttacctcttccttctatctacacattctgaaggtccaatttacagaa
aggaaaatacaaattggaggcaaacaaccaactggtttgtttctagcaagcataactttg
ctcttgaatgaacatgtgccttttgctaacggaaacttgacaatgagcaatgtagtttgt
gacaagaaacatatgatagttgggctttctgatggatctctgtataatatatcctggaag
ggagagttttgtggggcctttgatgcctttgatcttgattttcagtctcatgatggcagt
ggggttcctaaactagcaagttccttggaaaatggttttgcttctggcgggagtttatct
tcttctaaattcagtcatcatttgtcgaaaaactctgctgtgatccatttggagttctcc
ttacccttaaggttgcttgttgtgctattttctgatggacaattggtcttatgttctgtg
agcaaaaagggtctgaagcaaatggagtctatcaaagctgaaaagaaactgggctctggt
gatgctgtatgttctgcagttgcttcagatcaacaactccttgctgttggtaccagaaga
ggtgttgttgagttgtatgacattgcagaatctgcttcgcttctgcgttctgtttctctg
tatgattggggatattcagtagaggacactggtgctgtcagttgtgttgcttggacacct
gataattcagcttttgcagttgggtggaagttaagagggctaacagtttggtctgtttct
ggctgtcgcttgatgtccaccattcgtcaaattggcttaagttctgcatcttctccagtg
gtcaagcgaaatcaggaatgtaaatatgaacctatgatgagcggtacctcgttgatgaac
tgggatgaatatggatacaggctttatgctattgaggaaggatcttcagagagaatagtt
gcattctcttttggaaagtattgtctgaacagaggagtctctgggactacttatgtccga
caagtaatctatggtgaagatcgattgcttgttgtgcagtcagaagatactgatgaacta
aaactcttgcatcttagcctaccagtttcctacatctctcagaattggccagttcaacat
gtggctgctagcaaggatggaatgtacttagcagctgctggccttcatggactgatctta
tatgacataagattgaaaaagtggagagtttttggagatgtcacgcaggaacaaaagatc
cagtgcagaggcttgttatggcttgggaagattgttgttgtctgcaactatgatgattct
tctgacgggtatgaattacttttctatcccagatatcaccttgatcagagttcacttcta
tgtcggaaacctttacttaccaaacctatagtcatggatgtgtaccaagattatcttctt
gtcacttaccgaccttttgatgtccatatttaccatgtgaagttatctggtgaactaaca
ccttcgagttctcccaatttacagctttctacagtacgagagctatcaatcatgactgca
aagagccatcctgcatcaatgcgttttattcctgatcagctcccaagagaaggcgttgca
agaaatggtggcctgtccacttctttggatctgtcagtccgagagcctacccgatgctta
atactaaggacaaatggagagctttcacttcttgatttggatgaggggagagaaagaaca
ctcacggattctgtagagttgttttgggttacctgtggtcagtcagaggagaaagcaagc
ttgattgaggaagtttcatggttagactatggccaccgtggaatgcaggtttggtatcca
tcccctggtgctgatgtttttaagcaagaggattttttgcagttggatccggagctggaa
tttgatcgtgaggtttatcctcttggtttgcttccaaacgatggagttgtagttggtgtc
tcccagagaatgtcattttccgcatgtacagagttttcatgttttgagccatcacctcaa
gctcagactattttgcattgcctacttcgacatcttctacagagggataaaaaggaagaa
gctctaagattggcacaattatcagcagagaagccacatttttcgcactgcttagagtgg
ctcctttttactgtgtttgaagccgacatttctgggagcaagaatcagagtgtgattccc
aaccattcaacaaattcctcacttctggataagacatgtgatttgattaaaaattttccg
gagtactttgacgtcgtcgttagtgttgcaagaaagactgatggccggcattgggcagat
ttatttgctgctgccgggagatcgactgagctatttgaggaatgcttccaaagcagatgg
tatcgaactgccgcttgctatatactagtaattgctaagcttgaaagtccagctgtaagt
caatattgtgcattgcgtttgttgcaggtaatcacgtgcagatgtaatgaatcttggctt
ttaatccatgcaacattggatgagtctttatacgaactggcaggggaactggtgaggttt
cttctcagatctggacgggaatatgaacccacaaccactgattctgagaagctatctcct
agattctttggatattttctgtttccctctagttaccggaggcaaactttggagtccaaa
ggttcatttaaggagccgagtgcacatgttgcttctgttaagaatattttagaaagtcat
gcaagctatttgatgtctggaaaagaactgtcaaagcttgttgcgtttgtgaagggcacg
cagtttgatctcgtggaatacttgcagcgagaaagatatggaagtgctcgtttggacaat
tttgcttcaggctttgaacttatcgggcagaagcttcagatgggaacgttgcaaagtcgt
ttagatgcagagttccttttgtctcatatgtgctctgtgaagttcaaagagtggattgta
gtactggccacacttttgaggcggtctgaggtcttatttgacttatttcagcatgatttg
cgcttgtggaaagcatatagcattactttaaagacccatccgtcatttgtcgaataccat
gacttgcttgaaagtttggatgaaaagctttcatccacttcaaattcagaagagacatga
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