Solanum dulcamara (climbing nightshade): 129896279
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Entry
129896279 CDS
T09577
Name
(RefSeq) probable polygalacturonase At3g15720 isoform X1
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul00040
Pentose and glucuronate interconversions
sdul01100
Metabolic pathways
Module
sdul_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
129896279
Enzymes [BR:
sdul01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
129896279
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
129896279
NCBI-ProteinID:
XP_055828111
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Position
7:6089082..6093136
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AA seq
415 aa
AA seq
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MHGSCTIWIMMTSLQFYFCIFLVYLCMVSSVWSADIKTFNVINFGAIGDGRTDDLPAFLK
AWEAVCQSESSRVILVIPKRKKFLLMPSTFDGPCKPSRMHIQVSGNIIAPNSKSGWDGAA
SNAWLTFSNINHLTVNGNGVFDGQGHIWWSNPCMNDNTSQETQCKGPTALIFRRCDQLRV
RGVTITRSARSHIILTACNEVSIANIRIMSPGDSLNTDGIDVSASTNVRIHNSLIATGDD
CIAIGGGSSNVSISGITCGPGHGISIGSLGEGGFEVVEDVNVRNCTIKDTLAGVRIKTWQ
GGEGYARRIAFEGIIFVAVNNPVIIDQFYCPSKVNCKNDTAAVALSDITFRGILGTSLMD
EVINLSCSETVGCKNILVDRVYISSVNGNPVHAKCINAHGRYTHTRPAVKCLLPP
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgcatggttcttgtactatctggatcatgatgactagtttgcagttttacttttgcatt
ttcttggtttatttgtgcatggtttcttctgtatggagtgctgatattaaaactttcaat
gtcatcaattttggggccatcggagacggaagaactgatgatcttccggctttcctcaag
gcatgggaagctgtgtgtcaatcggaatccagtcgtgtaattcttgttataccaaaaaga
aagaaattcttacttatgccttcaacatttgatggtccttgcaagccctcacgtatgcat
attcaggtatctggaaatataattgcacccaactcaaaatcaggatgggatggagctgca
tccaatgcatggctcactttctcaaacatcaaccatcttactgttaatggcaatggagtt
tttgatggccaaggccatatatggtggtcgaatccttgcatgaatgataacacatcccaa
gaaacacaatgcaaaggaccaactgcattgattttcagaagatgtgatcagcttcgagtt
aggggagtaacgattactagaagcgctagaagtcatatcatattgactgcttgcaatgaa
gttagcattgctaatattcgtattatgtcccctggtgatagtctcaacaccgatgggatt
gacgtttctgctagcactaacgtacgaatacacaactctctcatcgcaacaggtgacgac
tgtattgcaataggaggaggatcgtccaacgttagtattagcggcataacatgtggacca
ggtcatggtattagtattggatccttgggagaaggaggatttgaagtagtggaagatgtg
aacgtacgaaattgcacgataaaagacaccttagctggagtaaggattaagacctggcag
ggaggtgaagggtatgcaaggaggattgcttttgaaggaattatatttgttgcagtcaac
aatcctgtaatcatcgaccagttttactgtcccagtaaagtcaattgcaaaaatgataca
gctgcagttgcattgagcgacataacattcagaggaatactagggacttccctgatggac
gaggtgataaatctgagctgcagcgagactgttggctgcaaaaacatacttgttgatcgg
gtatatatatcatctgttaatggtaaccctgttcatgccaagtgcatcaatgctcatgga
agatacactcatactaggcctgctgtgaagtgtctgctgccgccatag
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