Solanum dulcamara (climbing nightshade): 129896870
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Entry
129896870 CDS
T09577
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129896870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129896870
03012 Translation factors [BR:
sdul03012
]
129896870
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129896870
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
129896870
Translation factors [BR:
sdul03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
129896870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
AAA_16
NACHT
ATPase
PhoH
AAA_11
Motif
Other DBs
NCBI-GeneID:
129896870
NCBI-ProteinID:
XP_055828826
LinkDB
All DBs
Position
7:complement(3996618..4007147)
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AA seq
1206 aa
AA seq
DB search
MPYTNLIQNCLKVRLKATQFLATMSSSNTTTSLQVCPNRFHFKTNPLLYRSSQSVIPQKR
CLHGSVGFFCSAKGSSSSSSSSIVLRRKRHGSSSSSYPSPYFYQQNLGYGRFAYDECESE
SESDRETESSKQLGESTLHNIEEWRWKLSMLMRKKNDQEVVSTDKKDRRDFEHISAMATR
MGLHCRQYEKTVVCSKVPLPNYRPDLDVKRPQREVVLPYGLQSRVGDLLEAHLSKKSINK
ENLVYNASLRGSNDNNSPNDKEVYENEKPFARSIVAERILRRRSLEMRNKQEDWQGSPEG
QKMLELRRNLPAYKEREALLRAISENQVVVVSGETGCGKTTQLPQYILEAEIEAARGATC
NIICTQPRRISAMSVAERVAAERGENLGESVGYKVRLEGMRGRDTRLLFCTTGILLRRLL
VDRKLEGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLNAELFSSYYGG
APMIHIPGFTYPVRSHFMENILEMTRYRLTPYNQIDNYGQDKMWKMQKQTIRKRKTQIAS
AVEEALESADFGQYTALTRDSLSCWNPDSIGFNLIEHVLCHICRNERPGAVLVFMTGWDD
INTVKDQLQAHPLLGDPRRVLLLACHGSMASAEQKLIFDKPEDGIRKIVLATNMAETSIT
INDVVFVVDCGKAKETSYDAINNTPCLLPSWISKASARQRKGRAGRVQPGECYHLYPRCV
FEAFADYQLPELLRTPLQSLCLQIKSLQLGSISDFLSKAIQSPEPLSVQNAIEYLKTIGA
LDEDENLTVLGRNLSMLPVEPKLGKMIILGVVFNCLDPVLTVVAGLSARDPFLMPFDKKD
LAESAKAQFSARDFSDHLALVRAYDGWKDAERQQSGYEYCWKNFLSAQTLKAMDSLRKQF
LYLLKDIGLVGSIQSCNAWSNNEHLVRAIVCGGLFPGICSVVNKEKSISLKTMEDGGVLL
YSNSVNAQEPQIPYPWLVFNEKVKVNAVFLRDSTAVSDSVVLLFGGGISGKALDGHLIML
GGYLEFFMSPSLANTYISLKRELNELVHKKLSDRHFDVGSHGELLEAVRLLVSEDQCEGK
FVYGRKPCPKKSAKELQKNVISTKGSGGENPKSHLQTLLARAGHQSPSYKITQLKNNKFR
ATVIFNGLNFAGQPSCSKKEAEKDAAAEALQWLTGETQSPSKAVEHMSALLKKSKSNKQL
HSTKWR
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgccttacactaatcttattcaaaactgcctcaaagtgaggctaaaggccacccaattt
ctggccactatgtcttcatccaatactacaacttctctgcaagtttgtccaaatcgtttc
cattttaaaacaaaccctcttctttaccggtcgtcacaatccgtaatacctcaaaaacga
tgcctccatggaagtgttggattcttttgctcagctaaagggtcttcttcttcgtcgtcg
tcatctattgtgttgaggcggaaaagacatggttcatcttcttcttcttatccgtctccg
tatttttatcagcagaatttggggtatgggagatttgcttatgatgaatgtgagtctgag
tcggagtctgatcgagaaactgagtcgtctaagcaattgggtgaatcaacccttcataac
attgaagaatggaggtggaagctaagcatgctaatgcgcaaaaaaaatgaccaagaagtg
gtctcaacagacaaaaaggaccgccgtgattttgagcatatatcagctatggcaactaga
atgggtttacactgccgtcagtatgaaaaaacagttgtatgtagcaaagtcccattgcca
aattataggccagatttggatgttaagcgtccacaaagagaggtagtgttaccttatgga
ttacaaagtagggtaggtgatcttcttgaagcacatctttctaaaaagtcaataaacaag
gaaaaccttgtatataatgcttccttgagaggaagcaatgacaacaattctcccaatgat
aaagaagtttatgagaatgagaagccatttgcacgaagtattgtagcggaaagaattctc
aggcgaaggagcttggagatgcgtaataaacaagaagattggcagggatctcctgaaggc
cagaagatgctagaacttcgaagaaatctccctgcatataaagagagagaggcattgctt
agagccatttctgagaatcaggtggtggttgtgtctggggaaactggttgtggtaagact
acccaattgcctcagtacattttagaagctgagatagaagctgctcgaggagctacttgc
aatataatttgtactcaaccaaggcgaatatctgctatgtctgttgctgaaagagttgct
gcagagcgtggggagaatctgggagaatctgtgggctataaggttcggcttgagggcatg
agagggagggatactcgcctcttattttgcacaactggtattcttttgaggagattactg
gttgatagaaagttggaaggtgtcactcacgttattgtagacgagattcatgaacgcgga
atgaatgaagatttccttttgattgtccttaaagatctccttccccgtcgacctgaattg
agactgattttgatgagtgctactcttaatgctgaactattctcgtcctattatggtggt
gccccaatgatccatattcctggttttacttatccagtccgaagtcattttatggaaaat
attttggaaatgactagataccggttgactccatataatcaaattgataactatggtcaa
gacaagatgtggaaaatgcagaaacagactattaggaagaggaagactcaaattgcttca
gctgttgaggaagcgctagaatcagctgattttgggcagtatactgctctgactcgggat
tcactatcctgttggaatcccgattcaattggcttcaaccttattgagcatgtgctatgt
cacatatgtagaaacgaaaggcctggtgctgtgttggtttttatgactggttgggatgac
attaatactgtgaaggaccagctgcaggctcatccactgttgggggatccaagaagagtt
ttgctgcttgcatgtcatggttccatggccagtgcagagcagaaattgatttttgataag
ccagaagatggaatcaggaaaattgtgttagctaccaacatggctgaaacaagtatcacc
ataaatgacgtggtttttgtggtcgactgtggaaaagcaaaagaaacgtcttatgatgca
atcaataacactccatgtttgcttccttcttggatttcaaaagcttctgctcggcaaaga
aaaggaagagctggccgtgttcaacctggggagtgttatcatctctatcctagatgtgta
tttgaagcttttgcagattatcaactgccagagcttctgagaacacctttacagtcccta
tgcctgcagattaaaagtttacaacttggaagtatttcagactttctatccaaggcaatc
cagtcaccagaaccactatctgttcaaaatgctattgagtatttgaagacaataggggct
ctagatgaggatgaaaatctgacagtacttggacgcaatctatcaatgcttccagttgag
ccaaaactggggaaaatgataatattaggtgtagtattcaactgcctggatccagttctg
acagttgttgctggtttaagtgctagagacccatttttaatgccatttgacaagaaggat
cttgctgagtctgccaaagcccagttttctgctcgtgactttagtgatcatcttgctctt
gttcgggcttatgacggctggaaagacgctgaaaggcagcaatctggttatgagtactgt
tggaagaatttcctttctgctcaaactctcaaagcaatggactcccttagaaaacaattt
ttatatctgcttaaggacattggtttagttggtagtattcagagttgtaatgcctggagt
aataatgaacatctggttcgagcgattgtatgtggtgggctattccctggcatatgctct
gttgtgaacaaggagaagtcaatctcattgaaaacaatggaggatggtggagtccttttg
tactctaactctgtcaatgctcaagaacctcaaattccatacccgtggcttgtcttcaac
gaaaaagttaaagtgaatgcagtattcctgcgggattctacagctgtatctgattctgtg
gtactcttatttggcggaggcatttctggaaaagctctagatggacacttgattatgctt
ggaggatacttggagtttttcatgagcccctcactggcaaatacttatataagcttgaag
agggagcttaatgaacttgttcataagaaactctcggaccgtcattttgatgtaggaagt
catggtgagctattagaagctgttagattgctggtgtcagaggatcaatgtgaaggtaaa
tttgtctatggtcgtaaaccgtgccccaaaaagtctgcaaaggagttacagaaaaatgtc
atttcaacaaagggcagtggtggtgagaatccgaagtctcatctccaaacattgcttgct
cgggctggccaccaatcacccagttacaagataacacagctaaaaaataataagttccgc
gccactgtaatattcaatgggttaaattttgctggccagcctagctgtagcaagaaggaa
gctgaaaaagatgcagctgctgaagctctgcagtggttgactggtgagacccaatcgcct
tctaaagctgttgaacacatgtcagcacttctgaagaaaagcaagagtaacaagcaactt
catagtacaaaatggaggtaa
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