Solanum dulcamara (climbing nightshade): 129897057
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Entry
129897057 CDS
T09577
Name
(RefSeq) DNA repair protein RAD4 isoform X1
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
129897057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdul03400
]
129897057
DNA repair and recombination proteins [BR:
sdul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
129897057
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
Motif
Other DBs
NCBI-GeneID:
129897057
NCBI-ProteinID:
XP_055828979
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Position
1:complement(2328052..2341488)
Genome browser
AA seq
950 aa
AA seq
DB search
MRTRNQAKRQNQSTADEDSSKYYDEMESQSGCKNEASGNETLANISQGAVGKLLQRVNKS
RGSRGLKTDDSYLRKEDTMGEVCLFLSLSLQLGNVLSETFPSGRENGSREAEKQLTGTTV
VRTTLDAKCCTTDVLQNVPSEVENGSTYVHCQSIEREDELDGIDWEDGSVHTLKSESNVK
EDTIIGVTVEFDAPPDPSKQKTVRRATAEEKELAELVHKVNLLCLLARGRLVDSACNDPL
IQASLLSLLPAHLLKLTDVPKLTAKVLSPLVDWFHSHFRVRGANDTEKPFHSALVSTLES
QEGTPEEVAALSVALFRALNLTTRFVSILDVASLKPEIEKPYPSGQGPSRAGSGIFNSST
LMVAGPKRSPLSSAKSMANDKHNVSNKTSTSAGQANNDKSRETITDKSNKRMSPSTLDAQ
GDSNDACIMNRERPKRKGDLEFEMQLEMALSTTAVEIARNTMVSDVKDVESTSSNVSPFK
KKKIKAEECSTSSHGISTALGSRKVGAPLYWAEVYCSCENLTGKWVHVDVVNAITDGEQN
VEAAAAACKLPLRYVVAFAGNGAKDVTRRYCTKWYKIACERVNSIWWDAVLAPLKELESV
ATSDVVNFAQGATRSYLEDMELETRQLTEPLPTNQQAYRSHQLYIIERWLNKNQILYPKG
PVLGFCSGHPVYPRSCVRTLQRKERWLREGLQVKANEIPAKVLKRSGKQNKGQDVEDDDY
GEGDCGGTVALYGQWQTEPLFLPPAVNGIVPKNERGQVDVWSEKCLPPGTVHLRLPRLVP
VAKRLQIDFAPAMVGFEFRNGRSLPVYEGIVVCTEFKDAILEAYAEEEVRREAKERRRTE
AEALSRWYQLLASLITRQRLHNCYVDGASSQSAVNIATPNDKSSLPAGGSENTRSAHQEE
SEIAKSNSPSIVLAENHEHVFLVEDQIVDEESSTRTKRCRCGFSVQYEEL
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgcgaaccagaaatcaggcaaagcgacaaaatcaatcaactgcagatgaagactcttcg
aaatactatgatgagatggagagccaaagcggctgcaaaaacgaagccagtggcaatgaa
actcttgcaaacatatctcaaggtgcagtggggaaacttttgcaacgagtcaacaagtca
cgtggctctcggggtctgaaaacagatgatagttacctacgcaaagaggataccatgggc
gaggtttgtttgtttctttctctatcacttcagttaggcaatgtactgagtgaaacattt
ccttcaggaagagagaacggatcaagggaggcagaaaagcagcttactggtactacagtt
gtaaggactacattagatgctaaatgctgcactactgatgtgttacaaaatgtgccatcg
gaagtggaaaatggaagtacatatgttcactgtcagagtattgagagggaagatgaactt
gatggtattgattgggaagatgggtcagttcatactttgaagtctgaaagcaatgttaag
gaagatacaatcattggtgtgactgttgagtttgatgctccgcctgatcctagtaaacag
aagacagtacgccgagcaactgctgaagaaaaggaattggctgagcttgtgcataaggtt
aacttgctttgtttactagcaaggggcagattggtagatagcgcttgcaacgatcctctt
attcaggcttctttactttcactgctgcccgcacatctgctgaaattgacagatgttcca
aaacttactgcaaaggtgctatctcctcttgtcgattggttccacagtcatttccgtgtt
agaggtgcaaatgatacggagaagccatttcattcagctttggtatcaactcttgagtcc
caggaagggaccccagaagaggttgctgcattatctgtggcactgtttagggctttgaat
cttaccaccaggttcgtatcaatcttggatgtggcttccttgaagcctgaaattgagaaa
ccatatccctctggtcaaggccctagtagggctggtagcgggatatttaactcttcaaca
ttgatggtggctggaccaaagcgttctcctctctcttctgctaaatctatggccaatgac
aagcataatgtttccaataagacttcaacatctgctggccaagctaacaatgacaagtct
agagaaactattacagataagtctaataaaagaatgtcaccatcaacattagatgctcag
ggtgattctaatgatgcatgcattatgaatagagagcggccaaagagaaaaggggatctt
gaatttgagatgcagttggaaatggctctttctaccactgcagttgaaattgctaggaac
actatggtctcagatgtgaaggatgtagaaagtacttcatcaaatgtatcaccgttcaaa
aagaagaaaattaaagcagaagagtgttcaacttcctctcatggaatatcaactgctctt
ggatctaggaaagtaggggcacctctatactgggcagaggtctactgcagttgtgagaac
ctgactgggaaatgggtgcatgttgatgtcgtaaatgcaatcactgatggagagcaaaat
gtggaagctgcagctgctgcatgcaagttgcctttaagatatgttgttgcttttgctgga
aatggagctaaagatgtgacacgcaggtactgtacaaagtggtacaagatagcatgtgaa
cgagtcaactcaatttggtgggatgcagtattggcaccattaaaggagttggagtctgtt
gccaccagtgatgtagttaattttgcacaaggagcaaccaggagctatcttgaagatatg
gagttggaaactaggcaattgactgaaccgcttccaacaaatcaacaggcttacagaagc
catcaactatacataattgaaagatggcttaacaaaaatcagatactttaccccaaagga
cctgtattaggtttttgttctggtcatccagtatacccacgatcctgtgtacgaacactc
cagagaaaggaaagatggcttcgcgaggggctccaagtcaaagctaatgagataccggca
aaggttctgaagcgttctggaaagcagaacaaaggacaggatgttgaagatgatgattat
ggagagggggattgtggaggaactgtcgccctctatggacagtggcaaactgaaccgctg
tttcttcctcctgcagtaaatggcattgttcctaagaatgagcgtggtcaagtggatgtc
tggtctgagaagtgccttccacccggtacagtccacttgagattgccaaggttggttcct
gttgctaaaaggctgcaaatagattttgcacctgctatggttggatttgaattccggaat
ggtcgatctctacctgtttatgaggggattgtggtgtgtaccgagttcaaggatgcaatt
ctagaggcatatgcagaagaagaggtgagaagagaggccaaagagcggaggaggactgaa
gcagaagctctttccaggtggtatcagcttcttgcatcgctcattacccgacagaggctg
cataactgctacgtagatggggcatcctcacaatcagcagtcaatattgcaacgcccaat
gataaatcctccttaccagctggtggcagtgagaacacgaggagcgcccatcaagaagaa
tctgagattgccaaatctaatagtccatcaattgtacttgcagaaaaccatgagcatgta
ttcctagtagaagatcagattgttgatgaagaaagttcaacaaggacgaaacgatgtcgt
tgtggcttttcagttcaatatgaggagttgtag
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