Solanum dulcamara (climbing nightshade): 129898191
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Entry
129898191 CDS
T09577
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic-like isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129898191
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdul03041
]
129898191
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129898191
Spliceosome [BR:
sdul03041
]
Complex C
Other components
Step II factors
129898191
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_2nd
KH_DEAH11_1st
KH_DEAH11
RRM_DEAH11
Helicase_C
DEAD
OB_NTP_bind
IBR
HA2_C
AAA_22
Rcat_RNF216
AAA_19
zf-C3HC4_2
IBR_1
zf-RING_UBOX
KH_1
zf-RING_5
KH_Vigilin
zf-C3HC4
ResIII
IBR_2
RsgA_GTPase
WHD_HA2
AAA_30
AAA_29
nSTAND_NTPase5
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
129898191
NCBI-ProteinID:
XP_055829064
LinkDB
All DBs
Position
1:complement(3748380..3755822)
Genome browser
AA seq
1713 aa
AA seq
DB search
MQKRVSWPVNQSGYGFHRNPPIHYRPPEFSKRNPSNFIIQLRATPQNWKLNRQHLNNLIA
KLPFTPENPSVIDSGFVVGILSYVEWNQTLEVMVKLWELRLSGGHCYNPILKAKIELPSD
KEELNERLKGVFLEKLNRLINGVLVQKWQKKLGFVIDEIEKISFLLKKPNRVGVYQELWK
NKKGIESERDLIVLRIDEFKNGIKCIMDYLEGFENNEDYRVFKFGEEIDWNTIHYLMMRE
CRRLDDGLPIYGFRQQIIQQILSQQVTVLVGETGSGKSTQLVQYLADSGIAGNGSMICTQ
PRKLAANSLASRVREESQGCYGDCSISCNPPHSSCQQFDSKVIFMTDHCLLQHYMGDKTL
SKISCIIVDEAHERSLNTDLLLALIKNLLHQRFDLRLIIMSATVDANQLADYYFGCGTFH
VAGRNFPVDIKYVPCEADAHPVVGAIAPYVHDVIKMVTEIDRTEGAGAILAFLTSQSEVE
WACEKFQSPLAIALPLHGKLSYDDQNRVFLSYPGKRKVIFTTNLAETSLTIPGVKYVVDS
GMVKESRFEPVSGMNVLRICSVSQSSANQRAGRAGRTEPGKCYRLYSQSDFEGMPCHQEP
EIRKVHLGVAVLRILALGIKNVQDFDFVDAPSPKAIEMATRNLVQLGAVTQRDDAYELTA
EGLKLVKLGIEPRLGKMILSCFDQHLGKEGVVLAAVMANSSSIFCRVGSEGDKLKSDCRK
VQFCHPNGDLFTLLSVYREWEIVPREKKNSWCWDNSINAKSMRRCHETVLEMEACLQNEL
NMIITSYWRWHPQGLNKYDEVLQSIMLSALAENVAVYSGYDQLGYEVALTGKCVQLHPSC
SLLNFGQRPRWVVFGDVLAAANEYLVCVTAFEFSSLVSLTPAPLFDFLKMDEQKLEKKVL
TGFGVVLLKRFCGKSNSSINNLISRIRTFYLDERIGIQVNVDDSEVLLYASSRDIESVSF
QVNDALEYESKLLRNECLEKCLFNGGSAASASVALFGAGAVIKHLELEKRCLTVDIFPSN
GNAIDDKELLMFLERATSGNICMVHKYSGMDQDKEENKWGTVKFLTPDAAERATFLNGVE
FNGGFLKMVPSRSIHNSDQKMFRSVLRAKVSWPRRYSKGVGFLECYQRDVPLILGDISDL
MIGENLIRCEASNKKPNNIVITGLDRYMAETEILEELRAATKWEILNFFLVRGDSAENPP
IATCEEALRKEISPFMPKRVPYVNSVRVQVFQPKLNEYFTKAAIIFDGSLHLEAAKALEQ
IDGMVLPGCLPWQKIRCERLFHSSVSCSAPVYHVIRNQLNSLLASLHRRKVGQCELQRND
NGSCTVRISATATKVVAEMRKPLEQLMKGKIVDHVDITPTVVQLLFSREGTNIMRTIQRE
TGTYIYFDKHSLLVSIFGSLDNVDRAQQRFIDSLLVLHESKQLEVHLRGGLLPHDLMKRV
VQTFGPDLSALKEKVPGAEFSLNTKRHCIYINGTKDMKQSVEDIISEIAQRSFPTQTTGD
DTGCPVCLCELEDPYKLEACFHVFCRTCLLEQCESAIKSREGFPMCCLHQGCAEPILLAD
LKSLLSIEKLEELFRASLGAFVAANGGTYRFCPSPDCPSVYRVADADMVGAPFACGACYV
ETCTSCHLEYHPYLSCETYQKVKDDPDCSLEEWSKGKDNVKKCPVCRCTIEKVDGCNHIE
CKCGNHVCWVCLRFFDTSDNCYGHLSSVHQSIT
NT seq
5142 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaacgggtttcttggccggtgaatcaatccggttatggatttcaccggaatcct
ccgatccattatcgaccaccggaattttcgaaacggaacccatccaatttcataatccaa
ctccgggcaactccacagaactggaaactgaaccggcaacacctgaacaacttgatagca
aaattacccttcaccccagaaaacccttcagttatagactccggtttcgtcgtgggaatc
ttatcgtatgttgaatggaatcaaaccttagaagttatggtgaagttatgggagttaagg
ttaagtggtgggcattgttataatccaattttaaaagcaaaaattgaacttccatctgat
aaagaagagttgaatgagagattaaaaggggttttcttggagaaattgaataggttaatc
aatggggttttagtacaaaaatggcagaaaaagttgggttttgtgatagatgaaattgag
aaaatttcttttttgttgaagaaaccaaacagggttggagtttaccaggagctttggaag
aataaaaagggtattgaaagtgaaagagatttgatagtattaaggattgatgaattcaag
aatggaattaaatgtatcatggattatttggagggttttgagaataatgaggattatagg
gtgtttaaatttggtgaagagattgattggaatacaattcattatttgatgatgagagaa
tgtagaaggcttgatgatggcttaccaatatatggttttaggcagcagattattcaacaa
attctatctcaacaggtgacggttttggttggagagactggatcaggaaagagtacacaa
ttagtgcaataccttgctgattcaggaatagctggcaatggttctatgatttgcactcag
cctcgtaaacttgctgccaactctttagcaagtagggttagagaggaaagccaggggtgc
tatggtgattgttcaatctcctgtaatcccccacattcgtcctgtcagcagtttgattca
aaggtaatttttatgacagatcactgcctattacagcactatatgggtgacaaaactttg
tccaagatttcatgcatcatagtcgatgaggcacatgaaagaagccttaacactgatctt
cttttagcattgattaagaatctacttcatcagaggtttgatctgaggcttattattatg
tctgccacagttgatgcaaaccagcttgcagactactactttggttgtggaactttccat
gtggcgggcaggaattttccggttgatattaagtatgttccctgtgaagctgatgcccat
cctgttgtaggtgcaattgccccttatgtccatgatgttattaagatggtgactgagata
gatagaactgagggagcgggagctattctagccttcttgacatctcagagtgaagttgag
tgggcttgtgagaagtttcaatcaccactggcaattgctttacctttacatggcaaatta
tcctatgatgaccaaaaccgagtgtttctctcctatccagggaagagaaaggttatattc
accacaaatcttgctgagacatcactgacaatccccggtgtcaaatatgttgttgattct
ggcatggttaaagaaagcaggtttgaacctgtctctggcatgaatgttctcaggatatgc
agtgtgagccaaagttctgctaaccaaagagctggtcgtgcagggagaactgaacctgga
aagtgttacaggctgtactctcaaagtgattttgagggcatgccttgtcatcaggaacct
gaaattcggaaagttcatcttggtgttgcagtgctgaggattcttgctttaggtatcaag
aatgtgcaggattttgattttgttgatgcaccgagccccaaagctattgagatggccacc
cgaaatctagttcaactaggagctgttacccaaagagatgatgcatatgaattaactgca
gaaggactaaaattggtcaagttgggtattgagcctcggttgggaaaaatgatcctcagt
tgctttgatcaacatttgggtaaagaaggtgttgtgcttgctgccgttatggcaaattcc
agcagcattttctgtagggtcggttctgaaggagacaagttaaaatctgattgccgtaag
gtgcaattttgccatccaaatggtgacctctttactttactatctgtttacagggaatgg
gagattgtgcctagggaaaagaagaatagctggtgttgggataatagtatcaatgccaaa
tccatgagaagatgtcatgagactgtgctggaaatggaagcctgtcttcaaaatgagcta
aatatgatcataaccagttactggcgctggcatcctcaagggcttaacaagtatgacgaa
gtattgcaaagtataatgctttctgcacttgcggaaaatgttgctgtgtactcaggttat
gatcagcttggttatgaggttgcactaactgggaagtgtgtccaactacatccttcctgt
tcacttttgaattttggccaacgaccgcgttgggtagtctttggggatgtccttgcagca
gctaatgagtatctggtctgtgttactgcatttgagtttagttctcttgttagcctcact
cctgctcctttgtttgattttctgaagatggatgaacaaaagttagaaaagaaggttttg
acaggctttggagtcgtgctactcaaaagattttgtggaaaatctaacagtagcattaat
aatcttatctctcgcattagaactttttatttggatgaaaggataggtattcaagttaat
gttgatgacagtgaggttcttttatatgcttcttcaagagacatagagagtgtttccttc
caggtaaatgatgctctagagtatgaaagtaagctgttgaggaacgaatgcttagagaaa
tgtctattcaacggaggatcagcagcttcggcctctgttgccctctttggagctggtgct
gtgataaagcatttggagcttgagaagagatgtttgactgtggacatatttccctcaaat
ggaaatgccattgatgataaggaactgctgatgtttttggagagagccacatctggtaat
atttgtatggtgcacaagtactctggaatggaccaggacaaagaggagaacaagtggggc
acagtaaaatttcttacccctgatgctgctgaacgggctacattcttaaatggagtggaa
tttaatggtggctttctgaaaatggttccatccaggagcatacacaatagtgatcaaaag
atgtttcgctcagttctcagagctaaagtttcttggcctcgtaggtacagtaaaggagta
ggctttctggaatgttaccaaagggatgttcctttaattttaggtgacatctctgatctt
atgattggtgaaaatcttatccgttgtgaggcaagcaataagaaacccaacaacatagtc
attactggacttgataggtacatggctgagacagagatacttgaggagctgagggcagca
acaaaatgggaaattctgaatttcttcttggtgagaggagattctgcagaaaatcctccc
atagctacttgtgaagaagcacttcggaaagaaatatctcccttcatgcctaaaagggtt
ccgtatgttaattctgttcgtgtccaggtcttccagccgaaactaaatgagtatttcaca
aaagcagctataatatttgatggatctcttcatcttgaagcagccaaggccttggagcaa
atcgacggcatggttttgcctggatgccttccctggcagaaaataagatgtgagcgactg
tttcacagctctgtttcctgttctgcaccagtttatcatgtcatcaggaatcagctgaat
tctttacttgctagcctccaccgaagaaaggttgggcaatgcgagctacagagaaatgat
aacggttcctgtacagttaggatatctgccactgccaccaaagttgtggcagagatgaga
aagccgctggagcaacttatgaaaggcaagattgtagatcacgtggacattactccgaca
gttgttcaacttctgttctctcgagaaggaactaacattatgaggacaattcaacgggag
acaggaacctatatttattttgacaagcatagcttgcttgttagtatctttggttcttta
gacaatgttgatagggctcaacagagatttattgattcccttttggtgctacatgaaagt
aaacaacttgaggtgcatcttcgtggaggacttttgcctcatgacctgatgaaaagagtt
gttcagacatttggaccagaccttagtgcgcttaaagaaaaggtgcctggggcagagttc
tctctgaacacaaagcgccattgcatctatatcaatggtactaaagatatgaagcaaagt
gtggaggacataatctctgaaattgctcaaaggagttttccaactcaaacgacgggagat
gatactggctgtcctgtttgcttgtgtgaactggaggatccttataaacttgaagcttgc
ttccatgtattctgtcggacatgcttgctagagcagtgcgagtctgcaatcaaaagccgg
gaaggtttccccatgtgctgtcttcatcaaggttgtgcagaacccatcttgcttgctgat
ttgaagtctctattgtcaattgagaagttggaagaacttttcagggcttccttgggggct
tttgtggcagccaatgggggtacctaccgcttttgcccctcaccagactgcccttcagtt
tatcgcgttgcagatgctgatatggttggtgcaccttttgcctgtggtgcatgctatgtg
gagacatgtacgagttgccacctggagtatcatccttacctctcatgtgagacataccag
aaggttaaagacgacccggattgctctctagaggaatggtccaaggggaaagacaatgta
aagaaatgtcctgtttgcagatgtacaattgagaaggtggatggctgcaatcatatcgag
tgtaagtgcgggaatcatgtttgctgggtttgcttgcgcttcttcgacaccagtgataac
tgctatggtcatttgagttctgttcatcagtccattacatga
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integrated database retrieval system
