Solanum dulcamara (climbing nightshade): 129898662
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Entry
129898662 CDS
T09577
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdul03400
]
129898662
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
129898662
DNA repair and recombination proteins [BR:
sdul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
129898662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
DExH14_plug
ResIII
Helicase_C
AAA_22
AAA_30
AAA_19
DEXQc_Suv3
T2SSE
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
129898662
NCBI-ProteinID:
XP_055829264
LinkDB
All DBs
Position
8:70993069..71024248
Genome browser
AA seq
2088 aa
AA seq
DB search
MLFQLPRLTNALREPFDADQAYLHRKTILQNPKSRSTATSLEESELARKIVYKWDEASPE
LRQAYKQFVGVVVELMKGEIVSEEFREVAFSVYRLFTGPMVEGEEHRSIAEKKLDLQKLV
GYGVLDSLLSRVASLAQRLYELQNNHPGIETASLPEVSNGTTDEAEFGSDLVFRTPSRFL
IDVSLEDSDFLVEQESAPSSSHETQYDHGSFSNFRESVSGGKFDLSWLRDACDKIVRGST
SQLPRDELAMAICRVLDSEKPGDEIAGDLLDLVGDGAFETVQDLIMHKKEIVDAIHHGLI
ELKADKMSTGGQSRAPSYAVQVTVQTESEKQIDKLRRKEERKHRRGTNNGVEGDLSTVSF
SSLLHASEKKYIFEDLIGHGEGPNTLGHTALPQGTTRKHYKGYEEVIIPPTPTASMKPGE
RLIEIKELDDFAQAAFHGYKSLNRIQSRIYHTTYNSNENILVCAPTGAGKTNIAMIAILH
EIKHHFRDGYLHKDEFKIIYVAPMKALAAEVTSTFSHRLSPLNVTVRELTGDMQLSKNEL
EETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVE
STQSMIRIVGLSATLPNYLEVAQFLRVNSETGLFFFDSSYRPVPLAQQYIGISEHNFLAR
NELLNEICYNKVVDSLKQGHQAMVFVHSRKDTVKTADKLVELSGKNTESELFTNEEHPQY
EILKREVFKSRNKEVVQLFEHGIGIHHAGMLRADRNLTERLFSQGLLKVLVCTATLAWGV
NLPAHTVVIKGTQIYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYY
LRLLTSQLPIESQFINSLKDNLNAEVVLGTVTNVKEACAWLGYTYLFIRMKMNPLAYGIG
WDEVMADPSLSLKQRDLISDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYTSVE
TYNEMLSRHMNESELINMVAHSSEFENIVVRDEEQNELEMLARTYCPLEVKGGPSNKHGK
VSILIQLYISRGSIDTFSLISDAAYISASLARIMRALFEICLRRGWCEMSGLMLDYCKAV
DRKIWPHQHPLRQFDKDISSEILRKLEERGADLDHLHDMQEKDIGVLIRYAPGGKVVKQC
LVYFPSVLLTATVSPITRTVLKVDLVIAPQFVWKDRIHGTALRWWILVEDSENDHIYHSE
LFTLTKKMARADPQKLTFTVPIFEPHPPQYYIRAVSDSWLQADALYTITFHNLALPEAQT
SHTELLDLKPLPVTALGNGTFEALYKFSHFNPIQTQAFHVLYHTDRNILLGAPTGSGKTI
SAELAMLHLFNTQPDMKVIYIAPLKAIVRERMTDWRKRLVSQLGKKMVEMTGDYTPDLMA
LLSADIIISTPEKWDGISRNWHSRSYVTKVGLMILDEIHLLGADRGPILEVIVSRMRYIS
SQTDRPVRFVGLSTALANAHNLADWLGVDETGLFNFKPSVRPVPLEVHIQGYPGKFYCPR
MNSMNKPTYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQYAASDEHPRQFISMPEDSLQ
MVLSQVMDQNLKHTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPA
HLVVIKGTEYYDGKAKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFL
YEPFPVESSLREQLHDHINAEIVTGTISHKEDAVHYLTWTYLFRRLMVNPAYYGLEHAEP
GILNSYLSSLVQSTFEDLEDSGCIKINEDSVEPLMLGSIASQYYLKYTTVSMFGSKIGPD
TSLEVFLQILSGASEYDELPLRHNEENYNEKLAEKVRYAVDHNRLDDPHVKTNLLFQAHF
SQSELPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSTITCMHLLQMVMQGLWFDRD
SPLWMLPCMTDDLLSSLHNKGIASIQQLLDCPSESLWAITGSSAASKLYQDMRHFPRIQV
RIKIQKKESNGGKIFTLNIRLEDANTQRRTAKAFIPRYPKVKDEAWWLVLCNTSAGELYA
LKRVSFSGRLQTHMDLPSTLTNFQGIKLILVSDSYIGFEQEHSIEGLA
NT seq
6267 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttcaactccctcgccttaccaatgctctcagagaaccattcgacgccgatcaa
gcttaccttcaccggaaaaccattctgcaaaaccccaagtctcgcagtactgcaacttca
cttgaagaatcagaacttgcgcgaaagattgtgtataaatgggacgaagcttctcccgag
ttacgccaagcgtataagcagtttgttggcgtggtggttgagttgatgaagggtgagatt
gtgtcagaggagtttagggaggtggcattcagtgtgtataggcttttcactgggccaatg
gtggagggtgaggaacacaggagtattgctgagaaaaagctagatttgcaaaaacttgtt
ggctacggagttttagactcattactatcaagagttgcctctttagcacaaagattgtat
gaattgcagaataatcaccctggaattgagaccgcctctttaccagaagtgtctaatgga
accactgatgaagcggaatttggctcggaccttgtgttcagaacgccatcccgcttttta
attgatgtttccttggaagattctgattttcttgttgagcaggaaagtgcaccttcttca
agtcatgaaacacagtatgatcatggctccttctcaaattttagagaatctgtatctggt
ggaaaatttgatttaagctggttaagagatgcctgtgataagatagttagaggaagtact
tcacagcttcctcgagatgaactagctatggccatatgccgcgtacttgattctgagaaa
ccaggggatgagatagctggtgatttgcttgaccttgttggtgatggtgcatttgaaaca
gttcaggatcttatcatgcacaaaaaggaaattgttgatgcaatccatcatggactaatt
gaactgaaagctgacaagatgtctacaggtgggcaatcgcgcgctcctagttatgccgtc
caggtaactgttcaaaccgagtctgaaaagcaaattgataaacttcgtcgcaaggaagaa
aggaagcataggcgaggaacaaataacggggttgagggtgatttgtccaccgtgagtttt
agttctttgcttcatgctagtgagaagaaatatatatttgaggacctcattggtcatggt
gaagggccaaacaccttaggtcatacagcccttcctcaaggaacaaccagaaagcactac
aagggatatgaagaagtcattatccctccaacaccaactgcatctatgaaacctggggag
agactgattgagataaaggagctagacgactttgctcaagcagctttccatggctacaag
agtctcaaccgtattcagagcagaatttaccatactacttataatagcaacgaaaacata
ctagtatgtgcccccactggggctgggaaaacaaacatagctatgattgctattctacat
gagatcaaacatcactttagagatggttacttgcataaggatgaattcaagataatctat
gttgctcctatgaaggcattagctgcagaggtcacatcaactttcagtcaccgattgtct
ccacttaatgtaactgtgagggaacttactggagacatgcagctttctaagaatgagctt
gaggaaacacagatgatagtgacaacacctgaaaagtgggatgttattactcgtaaaagc
agtgacatgtcgctctcaatgctggtgaagctacttatcattgatgaggtccatttgcta
aatgatgatagaggccctgtgatagaagcattagtagcccgtacacttcgtcaggtggag
tccacgcagtctatgataaggatagtgggcctttcagccactttacccaactatttggag
gttgcacagtttctaagggtgaattcagaaacaggcttatttttcttcgattcgagctac
cgtccagtacctcttgcgcagcagtatattggtattagtgagcataactttttagcccgc
aatgaactgcttaatgagatatgctacaataaggttgttgattccttaaaacaagggcac
caggctatggtttttgtccattcacgtaaagacacagtgaaaactgctgataagctggtt
gaattgtctggtaaaaatacagagtctgagctgttcacaaatgaagagcatcctcaatat
gagattttaaagagggaagttttcaagtccagaaataaggaggtcgttcagctgttcgaa
catgggattggcattcatcatgctggaatgttacgtgctgacagaaacctaacagaaaga
cttttctctcagggacttttgaaggtccttgtttgcacagcaactttggcatggggagtc
aatttgcctgctcacacagttgtgattaagggaactcaaatatatgatccaaaggctggt
ggatggcgagatctgggtatgctagatgttatgcaaatcttcggacgtgctggaagacct
cagtttgataaaagtggtgaaggcattataatcacttcacatgacaagttggcttattat
ttacgtctattgacaagtcaacttcctatagaaagtcagtttatcaattccttgaaagat
aatctaaatgctgaggtggtactgggtactgtaacaaatgtcaaggaagcttgtgcttgg
cttggttacacatatcttttcattaggatgaagatgaatcctttggcctatggcatcgga
tgggatgaggtcatggcagatccatcattaagcttaaagcaaagggatcttataagtgat
gcagctcgtgcacttgacaaggcaaaaatgatgcgttttgatgagaaaagtgggaacttc
tactgcactgagcttggtcgtattgcaagccacttttatatccagtatactagtgttgaa
acttacaatgaaatgctgtcacgccatatgaatgaaagcgagttgataaatatggtagct
cattcttctgaatttgaaaatattgttgtccgagacgaggaacaaaatgagcttgagatg
ttggctcgcacatattgtccattggaagtcaagggtggtccatctaacaaacatggaaaa
gtttcaattcttattcagctgtacatctctcgaggatcaattgacacgttttcactgatc
tctgatgctgcttatataagtgcaagcctggctcgtatcatgcgagctctctttgagatt
tgtctgcgtagagggtggtgtgagatgtctggtcttatgttagactattgcaaggctgta
gatcgcaaaatatggccccatcaacatcctcttagacagtttgacaaggacatttcttca
gaaatattgaggaagcttgaagaaaggggggcagatttggatcatttacacgatatgcaa
gagaaagatatcggagttttgattcgttatgcacctggaggaaaggttgttaagcaatgt
ctggtatatttcccatcagtcctgttgactgctacagtcagtccaatcactagaacggtt
ctgaaggtggatttggttatagctccacagtttgtttggaaggatcgaattcatggcact
gcattgcgctggtggattctggttgaggattctgagaatgaccacatttaccattctgag
ctcttcaccctcacaaagaaaatggccagagctgatccacagaaattaacctttactgtg
ccaatctttgaaccacatcctccacagtactacattcgtgctgtttctgactcgtggcta
caagcagatgctttgtacacaataactttccacaaccttgctcttccagaggctcaaaca
tcccacactgagcttctagatttgaaaccccttcctgtgactgcactcggcaatggaact
tttgaggccttgtataaattttcacacttcaatcctatacaaacacaggcctttcatgtg
ctgtatcacacggacagaaatatacttttaggagctccgactggaagtgggaagacaata
tcagctgagcttgctatgctccatttattcaatacacaacccgatatgaaggttatctat
atagcacctttaaaggctattgttcgggagagaatgacggactggagaaagcgtcttgtt
tcccaacttggaaagaagatggttgaaatgactggtgactacaccccggatctaatggct
ctcttgtcagcagacatcataatctccactcctgaaaaatgggatggtatcagtcgcaat
tggcacagtcgaagctatgtcactaaggttgggcttatgattttggatgagattcattta
cttggagctgatcgaggacccatacttgaggttattgtctcaaggatgagatatatatct
tctcaaacagaccggccagttcgatttgttggcctgtcgacagcattagcaaatgcacat
aatttggctgattggttgggtgtcgatgaaactggtctcttcaatttcaagccaagtgtg
aggcctgttcctcttgaagttcatattcagggatatcctgggaagttttactgcccgagg
atgaatagtatgaacaagcccacatatgctgctatatgtacccactcaccaacaaaacca
gttctaatttttgtctcatctcgtcgtcaaacaaggcttacagcactggaccttattcag
tatgcggcttcagatgagcacccaaggcagttcataagcatgccagaagattcacttcag
atggttctttctcaagtcatggaccagaacttgaagcacaccttacaatttggaattgga
ttacaccatgccgggctgaatgataaagacagatcattggttgaggaactgtttgcaaac
aacaagatccaggtgttggtttgtacaagtacgttagcatggggtgtaaaccttcctgca
catttggttgttattaagggaacagagtattatgatgggaaggcaaaaagatatgttgat
ttcccaatcactgatatattacaaatgatgggtcgagctggtcgtccacaatatgatcaa
cacgggaaagctgttattcttgttcatgaacccaagaagagcttttataaaaagtttcta
tatgaaccattcccagtggaaagtagcctgagagagcaactgcatgaccacatcaacgcg
gagattgttacgggaacaatctcacataaagaggacgctgtgcattacctcacttggacc
tacttgtttcgtagattgatggttaacccagcttactatggcctagagcatgcagaacct
gggattctaaattcttatttgtctagcttggtgcaaagcacatttgaggatctagaagac
agtggatgcatcaagattaatgaggacagtgtcgaaccactgatgttgggctcaatagca
tctcagtactatctgaagtacaccactgtatcaatgtttggttcaaaaataggacctgat
acatcgcttgaggttttcctacaaatactctctggtgcttctgaatacgatgagctcccg
ctgaggcataatgaggaaaactacaatgaaaaattagctgagaaagttcgatatgctgtc
gaccacaatcgcctggatgatcctcatgtgaaaacaaatctgctctttcaggctcatttt
tcccaatcagagttgccaatcagcgattatgtcacagacttaaagtctgtgctggatcaa
agtatacgtattattcaggctatgatagatatttgtgccaacagtggatggctctcaagt
accattacctgtatgcatctgttgcaaatggtcatgcagggcttgtggtttgatagggac
tctcctctttggatgttaccatgcatgactgatgatctactcagctcattgcataataaa
ggaattgctagtatccagcagctgttggattgtccttcagaatcattgtgggctatcact
gggagttcagctgcctcgaaactctatcaggatatgcggcatttccctcggattcaagtt
cgaattaaaattcagaaaaaggaatctaatggtgggaagatatttaccttgaacattaga
ttggaagatgcaaatacccagcgaagaacagcaaaagcttttatcccacgatatccaaag
gtaaaagatgaagcttggtggttagtcctttgtaatacttccgcgggtgaactgtatgct
ctgaagagagtgtctttctccggtcgtttgcagacacacatggatttgccatccactctg
accaatttccaggggataaaactcattctagtatcggattcttatattgggtttgaacaa
gaacactcgatcgaaggactggcttaa
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integrated database retrieval system
