Solanum dulcamara (climbing nightshade): 129899126
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Entry
129899126 CDS
T09577
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03013
Nucleocytoplasmic transport
sdul03015
mRNA surveillance pathway
sdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129899126
09122 Translation
03013 Nucleocytoplasmic transport
129899126
03015 mRNA surveillance pathway
129899126
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129899126
03041 Spliceosome [BR:
sdul03041
]
129899126
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129899126
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
129899126
Spliceosome [BR:
sdul03041
]
Complex C
Other components
EJC/TREX
129899126
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
129899126
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
129899126
NCBI-ProteinID:
XP_055829923
LinkDB
All DBs
Position
8:66197602..66205628
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AA seq
428 aa
AA seq
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MGDTKENEAYEEELLDYEEDDEKAPDSVNGKVNGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKLHKELLKNECPHIVVGTPGRVLA
LARDKDLSLRNVRHFILDECDKMLDSLDMRRDVQAIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSETEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLAECNFPSICIHSGMTQEERLTRYKAFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSEVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagatacaaaggagaacgaagcttacgaggaagaacttctcgactacgaagaagat
gatgagaaggccccagattccgtcaatggaaaagttaacggcgagtctgctaagaagggt
tatgttggaattcacagttccggattcagagactttcttttaaagccagagctactgcgg
gctattgtggattcagggtttgagcatccatctgaagtgcaacacgagtgtattccacaa
gctattctgggtatggatgttatttgtcaagccaaatctggaatgggcaaaactgctgtt
tttgttctttcgactctgcagcagattgaacctgttgctggtcaggttgctgctttggtc
ctatgccatacaagggagttagcttatcagatctgtcatgaatttgagaggttcagcaca
tatttgcccgatatcaaggttgctgtcttctatggtggtgtcaatatcaaacttcacaag
gagcttctgaagaatgaatgtcctcatattgttgttggaactcctggaagagtacttgca
ttggcaagagataaggacctatctctgaggaatgtgaggcattttattctggatgaatgt
gacaagatgcttgattctcttgacatgaggagagatgtgcaggcaattttcaagatgact
ccccacgacaagcaagtaatgatgttttcagcaacactcagcaaggagatccgtccagtc
tgcaaaaaattcatgcaagatccaatggaaatttatgttgacgatgaggcaaagttgacc
cttcatggacttgtacagcattacatcaaactgagtgaaacggagaaaaaccggaagcta
aatgatctgctggatgccttggacttcaaccaagtagttatatttgtcaagagtgtgaat
agggcagcagagctgaataaattactagcggagtgtaattttccatctatttgcatccac
tctggcatgactcaggaagaaagattgactcgctacaaagctttcaaggagggtcataag
agaattcttgtggcaactgatttggttggtaggggcattgacattgaaagggtcaacatt
gttattaactatgacatgccagattctgcagacacgtaccttcacagagtgggtagagct
ggtaggtttggaactaaaggccttgccattacatttgtgtcatctgcatcagattctgaa
gttcttaatcaggttcaggaaaggtttgaagtagacataaaagagcttcctgagcagatt
gatacttctacatacatgccatcttag
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