Solanum dulcamara (climbing nightshade): 129899185
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Entry
129899185 CDS
T09577
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129899185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdul03041
]
129899185
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129899185
Spliceosome [BR:
sdul03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
129899185
Complex C
U5 SnRNP specific factors
129899185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
T2SSE
Motif
Other DBs
NCBI-GeneID:
129899185
NCBI-ProteinID:
XP_055830010
LinkDB
All DBs
Position
8:77283953..77292482
Genome browser
AA seq
2174 aa
AA seq
DB search
MSNLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPSGEPESLYGKIDPKTFGDRAY
KGRPPELDEKLQKARKKKEREPLVSEPTRQSKKRRLQEESVLTSSEEGVYQPKTKETRAA
YEAMLSLIQQQLGGQPLNIVSGAADEMLAVLKNDNFKNPEKKKEIEKLLNPISNQVFDQL
VSIGRLITDYQDGGDASASAAADGDDGLDDDVGVAVEFEENEEEEEESDLDVVPDDEEED
DDVMEASASGAMQMGSGIDDDEMREADEGMALNVQDIDAYWLQRKISQAYEQQIDPQQSQ
KLAEEVLKILAEGDDREVETKLLVHLQFDKFSLIKYLLRNRLKVVWCTRLARAEDQENRK
KIEEEMLGLGPDHVAILEQLHATRATAKERQKNLEKSIREEARRLKDESGVDGDGERKAL
VDRDLDNGWLMGQRQFLDLDSLAFHQGGLLMANKKCELPVGSYRNHKKGYEEVHVPALKP
RPLDPGEELVKISSIPEWAQPAFSGMTQLNRVQSKVYETALFSPENILLCAPTGAGKTNV
AMLTILQQIALNRNEDDGTFNHNNYKIVYVAPMKALVAEVVGNLSKRLVHYGVTVKELSG
DQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESI
IARTIRQIETTKEHIRLVGLSATLPNYEDVAVFLRVDLKKGLFHFDNSYRPVPLAQQYIG
ITVKKPLQRFQLMNDVCYEKVISIAGKHQVLIFVHSRKETSKTARAIRDTALANDTLGKF
LKEDSLTRELLQSQTELVKSNDLKDLLPYGFAIHHAGMVRTDRQLVEDLFADGHVQVLVS
TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDTYGEGIILT
GHSELQYYLSLMNQQLPIESQFISKLADQLNAEIVLGTVLNAKEACKWLLYTYLYVRMVR
NPTLYGLAADALKTDYALEERRADLVHSAAILLDKNNLVKYDRKSGYFQVTDLGRIASYY
YITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKES
LEEPSAKINVLLQAYISRLKLEGLSLSSDMVYITQSAARLMRALFEIVLKRGWAQLAEKA
LKWCKMISKRMWSVQTPLRQFHGIPNEILMKLEKKDLAWERYYDLSSQELGELIRFPKMG
RTLHKFIHQFPKLNLAAHVQPITRSVLRVELTITPDFQWDDKVHGFVEPFWIIVEDNDGE
YILHHEYFMLKKQYIDEDHTLNFTVPIYEPLPPQYFIRVVSDRWLGSQTVLPVSFRHLIL
PEKYPPPTELLDLQPLPVTALRNPAYEALYQDFKHFNPVQTQVFTVLYNSDDNVLVAAPT
GSGKTICAEFAILRNHQKGPDSTIRAVYIAPLEALANERFNDWKRKFADHLGMRVVELTG
ETASDLKLLEKGQLIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIGGQGGPILEVI
VSRMRYISSQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGV
DIANFEARMQAMTKPTYTAIVQHARKGKPALVYVPTRKHARLTAVDLVTYSSMDSEDTPI
FLLRSAEELEPFVERINEPMLQETLKYGVGYLHEGLSATDQDIVKTLFETGWIQVCVMNG
TMCWGVPLSAHLVVVMGTQYYDGRENAHTDYPVTDLLQMMGHASRPLVDSSGKCVILCHA
PRKDYYKKFLYEAFPVESHLQHYLHDNLNAEVVVGVIQNKQDAVDYLTWTFMYRRLTQNP
NYYNLQGVSHRHLSDQLSELVENTISDLEASKCVTVEDEFLLSPLNLGMIASYYYISYTT
IERFSSSVTSKTKLKGLLEILASASEFEQLPIRPGEEELIRRLINHLRFSFENPKYTDPH
VKANALLQAHFSRQVVGGNLASDQQEVLLSATRLLQAMVDVISSNGWLSLALLTMEVSQM
VTQGMWERDSMLLQLPHFTKELAKKCQETPGKSIETVFDLVEMEDDERHELLQMSDLQLL
DIARFCNRFPNIDLTYDVLDSDNVSAGDDVSVQVTLERELEGRTEVGPVFAPRYPKTKEE
GWWLVVGDTKSNQLLAIKRVTLQRKSRVKLDFAAPAEAGTRNYTLYFMCDSYLGCDQEYN
FTLDVKEAMAEDDN
NT seq
6525 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatttgggcggcggtgcagaagcacatgcacgttttaaacagtatgagtacaga
gcgaactcaagtcttgttctaactactgattctcgtccccgagatactcatgaaccctct
ggtgaacctgagtctctttatggaaaaattgaccctaaaacgtttggtgatcgagcttac
aagggtagacctccagagttggatgagaaacttcagaaggctaggaagaagaaggagcgg
gaaccacttgtctctgagccaactagacaaagcaagaagagacgacttcaggaagaaagt
gttcttacttcgagtgaggaaggtgtttaccagcctaaaacaaaggaaactagagctgct
tatgaggctatgctcagcttgattcagcagcaacttggtggacagcccctcaacattgtg
agtggggcggctgatgagatgttggcggtgttaaaaaatgacaacttcaagaatcctgaa
aagaaaaaggaaattgaaaagctgttaaatcctatatcgaatcaggtgtttgatcagttg
gtgtcaattgggagactcattactgattatcaggacggtggtgatgcatcagcgtctgct
gcagctgatggcgatgatggtcttgacgatgatgtcggtgtagcagttgagtttgaggag
aatgaagaagaagaagaagagagtgatcttgatgtggtacctgatgatgaagaggaggat
gatgatgtgatggaagccagtgcttctggcgctatgcagatgggcagtggcattgatgat
gatgagatgcgggaggccgatgagggaatggccttgaatgttcaggacatagatgcttat
tggcttcaaagaaagatttctcaagcttatgagcaacagattgatccccaacagagccaa
aagcttgctgaagaggttcttaaaattcttgctgaaggcgatgatcgcgaagtagaaaca
aagctgctggtgcatctccaatttgataagttcagtctcatcaaatatcttctgcgaaac
cggctaaaggtagtatggtgtacccgtcttgcaagggccgaagaccaagagaataggaag
aaaattgaagaagagatgttggggttggggccagatcatgtagctatattagaacagttg
catgctactagggctactgcaaaagagaggcagaagaatctggagaaaagcattagggaa
gaagctcggcgtcttaaagatgagtctggtgttgatggtgatggagaaaggaaggcactt
gtagatagagatcttgataatggttggttaatggggcagcgccagtttcttgatcttgac
agccttgcatttcatcaaggcggtttgttgatggcaaataagaaatgtgagcttccagtg
gggtcttacaggaatcataagaaggggtatgaggaagttcacgtgccagcattgaagcca
aggccactagaccctggcgaagagcttgtgaagatatcctccattccagagtgggctcaa
ccagcattcagcgggatgacccaattgaacagggtgcagagtaaagtatatgagactgcc
ctcttttctccagagaacattttgctctgtgctccaactggtgccgggaagaccaatgta
gctatgctcactatacttcagcaaattgcactaaaccgcaatgaagatgatggtacattc
aaccacaacaactataagattgtatatgtggcacccatgaaagcccttgttgctgaagtg
gttggtaatctctccaagcgtttggtacattatggtgtcacggtgaaagagttgagcggt
gatcaatcattaactcgtcaacagattgaagagactcaaattattgtgactaccccagag
aagtgggatattataacgagaaagtcgggcgatcgcacatatacacagcttgttaaactt
cttattattgatgagattcatctcctgcatgacaacagaggtcctgtcttggagagtatc
attgctagaactattcgacagatcgaaaccacaaaagagcatattcggcttgttgggttg
tctgcaactcttccaaattatgaggacgtggctgtgtttttgcgagtggatctgaagaaa
gggctcttccattttgacaatagctataggcctgttccattggctcaacagtacattgga
attacagttaagaagccactgcagagattccagttgatgaatgacgtttgctatgagaag
gtgattagtattgcaggaaagcatcaggtgcttatttttgtccattcaaggaaggaaaca
tctaaaacagctcgcgcaatacgggatactgcacttgctaatgacacccttggtaagttt
ttgaaggaggacagtttaactcgggaactcctacagtcacaaactgagcttgtgaagagc
aatgatctcaaagatcttttaccatatggttttgctattcatcatgcgggaatggttaga
accgatcggcaacttgtggaggatctttttgctgatggccatgtgcaagtgttggtttca
acagcaactttagcatggggtgtcaatttacctgcacatactgtgattataaaaggtacc
cagatttacaatcctgagaaaggagcatggactgaactcagtccacttgatgttatgcaa
atgcttggtcgcgctggacgtcctcaatatgacacctatggtgaaggaatcatattaacg
ggccacagcgaattgcagtattatttgtccctgatgaatcagcagctgccaatagaaagt
caatttatctccaagttggcagatcagttaaatgccgagattgtccttgggactgtgttg
aatgccaaggaagcatgtaaatggctcctgtatacctacctctatgtccgcatggtacgg
aatcccacactttatggtctagctgctgatgctctcaagactgattatgctttggaggaa
aggcgtgccgacttggtacattctgctgctatattgctggacaagaataacttggtcaag
tatgacagaaaaagtggatatttccaggtgactgacctgggtcgcattgcgagttattat
tatataactcatgggacaatttccacgtacaatgagcatttgaagcctacgatgggtgat
attgaactttgtaggcttttctctcttagtgaggaattcaaatatgtaacagtcagacaa
gatgagaaaatggaattggcgaagcttctagatcgtgttcctatcccgataaaagagagt
cttgaggaacctagtgccaagatcaatgtactattgcaggcatatatttcacggctgaag
cttgaagggctgtccttgtcatccgacatggtttatataactcagagtgctgcacgtctg
atgcgagccctttttgagattgttctgaagaggggatgggctcagttagctgagaaggcc
ttaaaatggtgcaaaatgataagcaagaggatgtggagtgtacagacaccacttcgccaa
ttccatggcataccaaatgaaatcttgatgaagttggagaagaaagatttggcttgggag
cgttattatgatctttcatcgcaagagttgggagagcttatccggtttccgaagatggga
aggacattacacaagtttattcatcagttcccaaagctgaacctcgctgcacatgttcaa
ccgattacacggtcagtcttgagagttgaattgactattacaccggatttccaatgggat
gacaaggttcatggttttgttgaacctttctggataattgttgaagataatgatggagag
tatattcttcatcatgaatatttcatgctgaagaagcagtatattgatgaggaccatact
ttgaacttcacagtcccaatatatgagccattgcccccacagtatttcattcgtgttgtc
tccgacagatggctagggtcccagactgttttgcctgtctctttccgacatctgattttg
ccagagaaatatcctcctcccactgagttactagacttgcaacctctgccagttactgca
ttgaggaatccagcatatgaagcactttatcaagatttcaagcatttcaatccagttcag
actcaggttttcacagtgttgtacaattcagatgacaatgtcttggttgctgctccaact
ggtagtgggaagaccatttgtgccgaatttgccatattgaggaatcatcagaaaggacct
gatagtaccattcgtgctgtgtatatagctccactagaggctcttgctaacgagcggttc
aatgattggaaaaggaaatttgcggaccatctgggaatgagagttgttgaattaactggg
gagacagccagtgatctgaagctgttggagaagggtcaactaattatcagcacacctgag
aaatgggatgccttatctcgtcgctggaaacaacgtaagcatgttcagcaagtcagtctt
ttcattattgatgaattgcacctgattgggggtcaaggtggcccaatcctggaggtgatc
gtctctcggatgagatatatctcaagccaagttgagaacaagatccgcattgttgctttg
tcaacttccttagctaatgccaaggatttgggagaatggattggggctacatctcatggg
ctcttcaactttccgcctggtgtaaggcctgttccacttgaaatacacattcaaggtgtt
gatattgccaactttgaagctaggatgcaagccatgacaaaacccacatatactgcaata
gtccaacatgcaaggaagggaaaacctgcacttgtgtatgttcccacaaggaagcatgct
cgcttgactgctgtagatctggtgacttattcaagcatggacagcgaagacacacctata
tttctgctacgatctgcagaagagctggaaccttttgtggaaaggatcaatgaacctatg
ctgcaagagacactcaagtatggtgtgggctacttgcatgaagggttgagtgccactgat
caggatatagtgaagacattgtttgaaactggatggattcaagtgtgtgtgatgaacggt
acaatgtgttggggagtaccgttatctgcacatttggtggtggtcatgggaacacagtac
tatgatggtagggaaaatgcacacactgattatcccgttaccgatttgttgcagatgatg
ggccatgccagtcgacctcttgtagatagctcagggaagtgtgttatcctctgccatgca
ccacgcaaggattactacaagaagttcttgtatgaagcattcccagttgaaagccatctg
caacattatctccatgataatttgaatgctgaggtggtggttggcgttattcagaacaag
caagatgctgttgattacctaacatggaccttcatgtatagaaggctgacacaaaatcca
aattactacaatctgcagggtgttagtcataggcatctgtctgaccaactgtcggagcta
gtggagaataccatcagtgacttggaggcaagtaaatgtgtcactgttgaggatgaattt
ttgctttcacctttgaatctcggtatgatagcgtcatattattatatcagttacactaca
atagagcgttttagctcttctgtgacctccaaaacgaagttgaagggcttgctggaaata
ttggcgtcagcatcggagtttgaacagctgccaatacgaccaggggaagaggaattgata
agaaggttgattaatcacctgcgtttctcttttgagaatccgaaatacacagatcctcat
gtcaaggctaatgctcttttacaagcccatttctctaggcaagtggtgggtggaaatctt
gcttctgaccagcaagaggtgcttctttctgctactaggctgcttcaagcaatggttgat
gttatttccagtaatggttggcttagtctagcacttttaacaatggaggtgagccagatg
gtgacacaggggatgtgggaacgtgactcgatgcttctccagcttccacacttcacaaag
gaattggctaagaagtgccaagaaactccagggaagagtatagagacagtttttgattta
gtggagatggaagatgatgagaggcatgagctcttgcaaatgtcggacttgcagcttctg
gatattgcccggttctgtaatcggtttccaaacattgatttgacgtatgatgtgctggac
agtgataatgtgagtgctggagacgatgtaagtgtgcaggtaacccttgagcgagaactt
gagggtagaacagaagttggacctgtttttgcacctagatatcccaaaaccaaagaggaa
ggatggtggcttgtcgtcggggatacaaagagcaaccaattactggccattaagagagtt
accctccaaagaaaatctagggtgaagctggattttgctgcccctgctgaagctggaaca
aggaactacacactctatttcatgtgcgattcttatctgggttgtgaccaggaatacaac
tttactcttgatgttaaagaggcaatggctgaagatgacaattga
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integrated database retrieval system
