Solanum dulcamara (climbing nightshade): 129899381
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Entry
129899381 CDS
T09577
Name
(RefSeq) mRNA-decapping enzyme-like protein isoform X1
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129899381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129899381
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129899381
mRNA degradation factors
5'-3' decay
Decapping complex
129899381
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
Motif
Other DBs
NCBI-GeneID:
129899381
NCBI-ProteinID:
XP_055830304
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Position
8:complement(74771711..74780150)
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AA seq
424 aa
AA seq
DB search
MCLSPVHHLFGQIYIEQNKAFVQFGAILGFVCYSKLGLSLQLLAVLRFGEIMSQSGKLMP
NLDQNSTKLLNLTVLQRIDPFIEEILITAAHVTLYEFSIDNSQWSRKDIEGSLFVVKSGS
YRSSQPRFQFIVMNRRNTDNLVEDLLGDFEYEIQLPYLLYRNASQEVNGIWFYNQRECEE
VANLFDRILGAYSKVPTKSKVPLTKSEFEELEAVPTMAVIDGPLEPSSSTASNAPHLPED
NSFVNFFSNAMTIGNASSTAVQGQLYHSSPATLPPPRPPASVPSSSAPVLLPSPSLSASS
LLSPLHDAPEPDISAKWSSNLVKPSSFFGPPPASSPLMPPISSSVPTAPPLLPLGNLQRP
YGTPLLQPFPPPTPPPSLTPTSAPVPNYVLVSSRDKVREALVMLVQDDQFIDMVYRAVLN
AHHS
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgtgtctgtcccctgttcatcatctcttcggtcagatatatatagagcaaaacaaagct
ttcgttcaatttggagcaattctagggtttgtgtgttactcgaagttgggcctcagctta
cagctacttgccgttctcagattcggtgaaataatgtcgcagagcgggaaattgatgccg
aatctggaccagaacagcacgaagctgctaaacttgacggttcttcagaggattgatcct
ttcattgaagaaattctcatcactgctgctcatgttactttgtacgaattcagtattgat
aatagccaatggagtcgaaaggatatcgaaggatctctatttgttgtcaagagcgggtct
tacaggagttctcaacctcgatttcagtttattgttatgaaccgcagaaatacagataat
ttggtggaggatctgttgggggattttgaatatgagatccagcttccatatttgttgtat
cgaaatgcttcccaagaagttaacgggatatggttttataatcagcgtgaatgtgaagaa
gttgcaaatctctttgacaggatactcggtgcatattccaaggtgcctaccaagtcaaaa
gtaccattgacgaagagtgaatttgaagagctggaagcagttccaaccatggctgtaatt
gatggtcctctggagccttcatcgtctactgcgtcaaatgctccgcatctccctgaggac
aattcctttgtgaacttcttcagtaacgctatgacaattgggaatgcttctagtactgca
gttcaagggcaactataccactcatctccagctaccctacctcctcctcgtcctcctgct
tctgttccttcgtcttcagcaccggtcctgcttccatctccttctctttcagcttcttcc
cttttgagccccctccatgatgcacctgaaccagacatcagtgctaaatggtcttcaaat
ctggtgaagccatcttctttttttggtcctccacctgcctcttctccgctgatgcctccc
atttcttcatcagtgcccactgctcctccacttttgccacttgggaatctccagcgccct
tatggaactcctttgcttcaaccatttcctccacccactcctcctccttctctcactcct
acttctgctcctgtccctaactatgtacttgttagtagccgagataaagtgcgggaagca
cttgtaatgcttgttcaggatgaccaattcatagacatggtataccgggcagtgctgaat
gctcatcattcataa
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