KEGG T09577: 129899505

Solanum dulcamara (climbing nightshade): 129899505

Entry

129899505         CDS       T09577

Name

(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like isoform X1

K10601

E3 ubiquitin-protein ligase synoviolin [EC:2.3.2.27]

Organism

sdul Solanum dulcamara (climbing nightshade)

Pathway

sdul04120

Ubiquitin mediated proteolysis

sdul04141

Protein processing in endoplasmic reticulum

Brite

KEGG Orthology (KO) [BR:sdul00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    129899505
   04120 Ubiquitin mediated proteolysis
    129899505
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:sdul04121]
    129899505
Enzymes [BR:sdul01000]
2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     129899505
Ubiquitin system [BR:sdul04121]
Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    129899505

SSDB

Motif

Pfam:

zf-RING_2 zf-C3HC4 zf-rbx1 zf-RING_UBOX zf-C3HC4_2 zf-C3HC4_3 zf-RING_11 zf-RING_5 zf-RING_16 zf-ANAPC11 zf-C3HC4_4 zf_RING_Vps8 Rtf2 Zn_ribbon_8 Prok-RING_4 zf-RING-like

Other DBs

NCBI-GeneID:

129899505

NCBI-ProteinID:

XP_055830469

LinkDB

Position

8:73075947..73084449

AA seq 538 aa
MMRVQTYVGLSIIASLAVIYHAFSSRGQFYPAMVYLSTSKISLVLLLNMGLAVMCILWQL
TKKIFLGTLREAEVERLNEQSWRELMEILFAITIFRQDFSMAFITMVTTLFLIKALHWLA
QKRVEYIETTPAVTKLSHIRIVSFMGFLLLIDSLLLYNYMNHLIQTRQSSGSLFFVFEYM
ILATTTVATFVKYVFYVRDMLMEGQWERKAIYTFYFELIRDLIHLTMYMCFFLMIFINYG
VPLHLIRKLYETFHNFKTRVADYIRYRKITSNMNLHFPDATPEELNGGDTICIICREEMT
TAKKLTCGHVFHVNCLRSWLERQHTCPTCRALVVPPENGTHAAGFRYAQQGTSLASISQG
SQANPRTNGYVSQHQARLQAAVAAAAIYEQSFVYPSAPTLPQYRSHGYALFPPSYGPVSS
VSVDSERERAANEWLQQHQSANMPFAYYLQSSFGPSGYPGANMPFGDSSWSNLSTSDTPL
EAHRIFLQKQSEVLQNQLMLLESSKTQRAADGAKVSESKGKTISLENAQNRQAEGADI

NT seq 1617 nt +upstreamnt +downstreamnt
atgatgagagtacaaacttatgttgggcttagtataatagcttcactagctgtcatttat
catgcctttagtagtagaggccagttttaccctgcaatggtttatttatcgacatctaag
atcagtctggtgcttctcctcaacatgggtcttgccgttatgtgcattttgtggcagcta
accaagaaaattttccttggcacccttcgagaggcagaagtggagaggctaaatgagcag
tcatggcgggaactcatggaaatacttttcgcaatcactattttccggcaagacttctcc
atggcgtttattaccatggttaccacactatttttaatcaaggctttgcattggttggcc
cagaaacgggttgagtacattgaaacaactccagctgttactaagttgtcccacattcgc
attgtctctttcatgggcttcctccttctcatagatagtctccttctgtacaactacatg
aaccatttgatacagacaagacagtcttctggttctctcttcttcgtgtttgagtacatg
atacttgctacaacaactgttgcaacatttgtaaaatatgttttctatgtacgtgacatg
ctgatggaaggacaatgggagaggaaggccatatatactttctactttgaacttattcgg
gacttgatccacttgactatgtacatgtgcttcttcctcatgattttcatcaattatggt
gtgcctctgcatttaattcggaagctttatgagacattccacaacttcaagactcgagtt
gctgattacatacgctatcgaaaaatcacttcaaatatgaatcttcattttccagatgct
acaccggaagagctcaatggaggtgacactatctgcatcatttgtcgtgaggagatgacc
actgccaagaaacttacttgtggacatgtctttcatgtcaattgcctccggtcatggcta
gaacgtcagcacacgtgtcctacttgcagagctcttgttgtaccacctgaaaatgggacg
catgctgcaggattccgatatgctcagcaaggaacaagtttagcgagcatatctcaaggt
tcccaagcaaatcctaggacaaacggttatgttagccagcaccaggctagactccaagct
gcagttgctgctgctgcaatttatgagcagtcctttgtttatccttctgcaccaacacta
ccccagtataggtctcatggatatgctctatttcctccgtcctatggaccagtcagttct
gtcagcgtggactcagaaagagagcgtgctgcaaatgaatggttacagcaacatcaatct
gcaaatatgccttttgcttactatctgcagagcagttttggtccttcaggatatcctggt
gctaacatgccttttggagatagttcctggagtaaccttagtacttcagatactccactc
gaggcacataggatattcttacagaagcagagtgaggttctgcaaaatcagctcatgctt
ctagagagttcaaagacacagagagcagcagatggcgcaaaagtttctgagagcaaggga
aaaacaatttcattagagaatgctcaaaatagacaggctgaaggtgcagatatttaa

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