Solanum dulcamara (climbing nightshade): 129899505
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Entry
129899505 CDS
T09577
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul04120
Ubiquitin mediated proteolysis
sdul04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
129899505
04120 Ubiquitin mediated proteolysis
129899505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sdul04121
]
129899505
Enzymes [BR:
sdul01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129899505
Ubiquitin system [BR:
sdul04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
129899505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-RING_11
zf-RING_5
zf-RING_16
zf-ANAPC11
zf-C3HC4_4
zf_RING_Vps8
Rtf2
Zn_ribbon_8
Prok-RING_4
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
129899505
NCBI-ProteinID:
XP_055830469
LinkDB
All DBs
Position
8:73075947..73084449
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AA seq
538 aa
AA seq
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MMRVQTYVGLSIIASLAVIYHAFSSRGQFYPAMVYLSTSKISLVLLLNMGLAVMCILWQL
TKKIFLGTLREAEVERLNEQSWRELMEILFAITIFRQDFSMAFITMVTTLFLIKALHWLA
QKRVEYIETTPAVTKLSHIRIVSFMGFLLLIDSLLLYNYMNHLIQTRQSSGSLFFVFEYM
ILATTTVATFVKYVFYVRDMLMEGQWERKAIYTFYFELIRDLIHLTMYMCFFLMIFINYG
VPLHLIRKLYETFHNFKTRVADYIRYRKITSNMNLHFPDATPEELNGGDTICIICREEMT
TAKKLTCGHVFHVNCLRSWLERQHTCPTCRALVVPPENGTHAAGFRYAQQGTSLASISQG
SQANPRTNGYVSQHQARLQAAVAAAAIYEQSFVYPSAPTLPQYRSHGYALFPPSYGPVSS
VSVDSERERAANEWLQQHQSANMPFAYYLQSSFGPSGYPGANMPFGDSSWSNLSTSDTPL
EAHRIFLQKQSEVLQNQLMLLESSKTQRAADGAKVSESKGKTISLENAQNRQAEGADI
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgatgagagtacaaacttatgttgggcttagtataatagcttcactagctgtcatttat
catgcctttagtagtagaggccagttttaccctgcaatggtttatttatcgacatctaag
atcagtctggtgcttctcctcaacatgggtcttgccgttatgtgcattttgtggcagcta
accaagaaaattttccttggcacccttcgagaggcagaagtggagaggctaaatgagcag
tcatggcgggaactcatggaaatacttttcgcaatcactattttccggcaagacttctcc
atggcgtttattaccatggttaccacactatttttaatcaaggctttgcattggttggcc
cagaaacgggttgagtacattgaaacaactccagctgttactaagttgtcccacattcgc
attgtctctttcatgggcttcctccttctcatagatagtctccttctgtacaactacatg
aaccatttgatacagacaagacagtcttctggttctctcttcttcgtgtttgagtacatg
atacttgctacaacaactgttgcaacatttgtaaaatatgttttctatgtacgtgacatg
ctgatggaaggacaatgggagaggaaggccatatatactttctactttgaacttattcgg
gacttgatccacttgactatgtacatgtgcttcttcctcatgattttcatcaattatggt
gtgcctctgcatttaattcggaagctttatgagacattccacaacttcaagactcgagtt
gctgattacatacgctatcgaaaaatcacttcaaatatgaatcttcattttccagatgct
acaccggaagagctcaatggaggtgacactatctgcatcatttgtcgtgaggagatgacc
actgccaagaaacttacttgtggacatgtctttcatgtcaattgcctccggtcatggcta
gaacgtcagcacacgtgtcctacttgcagagctcttgttgtaccacctgaaaatgggacg
catgctgcaggattccgatatgctcagcaaggaacaagtttagcgagcatatctcaaggt
tcccaagcaaatcctaggacaaacggttatgttagccagcaccaggctagactccaagct
gcagttgctgctgctgcaatttatgagcagtcctttgtttatccttctgcaccaacacta
ccccagtataggtctcatggatatgctctatttcctccgtcctatggaccagtcagttct
gtcagcgtggactcagaaagagagcgtgctgcaaatgaatggttacagcaacatcaatct
gcaaatatgccttttgcttactatctgcagagcagttttggtccttcaggatatcctggt
gctaacatgccttttggagatagttcctggagtaaccttagtacttcagatactccactc
gaggcacataggatattcttacagaagcagagtgaggttctgcaaaatcagctcatgctt
ctagagagttcaaagacacagagagcagcagatggcgcaaaagtttctgagagcaaggga
aaaacaatttcattagagaatgctcaaaatagacaggctgaaggtgcagatatttaa
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