KEGG   Solanum dulcamara (climbing nightshade): 129899508
Entry
129899508         CDS       T09577                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
sdul  Solanum dulcamara (climbing nightshade)
Pathway
sdul03030  DNA replication
sdul03410  Base excision repair
sdul03420  Nucleotide excision repair
sdul03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sdul00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    129899508
   03410 Base excision repair
    129899508
   03420 Nucleotide excision repair
    129899508
   03430 Mismatch repair
    129899508
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sdul03032]
    129899508
   03036 Chromosome and associated proteins [BR:sdul03036]
    129899508
   03400 DNA repair and recombination proteins [BR:sdul03400]
    129899508
DNA replication proteins [BR:sdul03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    129899508
  DNA Replication Termination Factors
   ELG1-RFC complex
    129899508
Chromosome and associated proteins [BR:sdul03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    129899508
DNA repair and recombination proteins [BR:sdul03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     129899508
  Check point factors
   HRAD17(Rad24)-RFC complex
    129899508
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 AAA_16 AAA_22 RCF1-5-like_lid AAA_11 AAA_assoc_2 DUF815 AAA_5 ATPase_2 AAA_14 AAA_30 AAA_24 RuvB_N AAA_7 DNAX_ATPase_lid ResIII AAA_3 AAA_19 bpMoxR nSTAND3 AAA_28 AAA_18 IstB_IS21 AAA_2 RNA_helicase SLFN-g3_helicase AAA_25 Mg_chelatase ABC_tran TniB DO-GTPase1
Other DBs
NCBI-GeneID: 129899508
NCBI-ProteinID: XP_055830477
LinkDB
Position
8:63339536..63347473
AA seq 360 aa
MAETISLMDIDDDKIDTKLNKGKNIVFSSSSAEPKSVPWVEKFRPQSLSDVAAHRDIVET
IDRLASSNRLPHLLLYGPPGTGKTSTILALARKLYGSQMHNMVLELNASDDRGIDVVRQQ
IQDFASTQSISFGAKSAVKLVLLDEADAMTKDAQFALRRVIEKYTRNTRFALICNNVNKV
IPALQSRCTRFRFAPLDAVHVSERLKHVIEAELLDVPEGGLKALVRLSNGDMRKALNILQ
STHMASQQITEDAVYLCTGNPLPKDIEQISYWLLNEPFAISCKRISEIKTRKGLAMVDIV
REVTMFVFKIKMPADVRVQLINEMADIEYRLTFGCNDKLQLGSLIAAFTRTRSALVAAAN
NT seq 1083 nt   +upstreamnt  +downstreamnt
atggcggagacaatctcgttaatggatattgacgatgacaaaattgacacgaaactaaac
aagggtaaaaacatagtcttttcaagctccagtgcagaaccgaaatcagttccttgggtc
gaaaagtttcgtcctcagtctctatctgacgttgctgctcatcgcgatattgttgaaaca
attgataggcttgcaagtagtaatcggttgccgcatttgctgctttatggacctcctgga
actggaaagacttctacaattcttgctcttgctcggaagttatatgggtctcagatgcac
aatatggttttagagctgaatgcctctgatgatcgtggtattgacgtggtgcgccagcag
attcaggactttgctagtactcagagcatctcatttggtgcaaagtcagcggtgaagtta
gtattattggatgaagcagatgcaatgacaaaggatgcacagtttgctctgcgtcgagtg
attgagaaatatacaagaaacactaggtttgccttgatatgtaacaatgtcaacaaggtt
attcctgccctacaatcacgatgtacacgatttaggtttgctccactcgatgcagttcat
gtttctgagcggctgaaacatgttattgaggctgaactgcttgatgtccctgagggtggt
ttaaaggcacttgtacgattgagcaatggtgacatgcgaaaagctttaaacattttgcag
tcaacacacatggcttctcagcagattacagaagatgctgtctatctgtgcactggaaac
ccattgcccaaggacattgagcagatttcttactggcttctgaatgaaccctttgctatt
agttgcaaacgaatatcggaaatcaagacacgaaaagggttggctatggttgatatcgtg
agagaagtaaccatgtttgtcttcaagattaagatgccagcagatgttcgagttcagctg
atcaatgagatggccgatattgagtataggttgacttttggttgcaatgataagttgcag
cttggatcactgattgctgcttttacacgaacaagatccgcacttgttgcagctgcaaat
taa

DBGET integrated database retrieval system