Solanum dulcamara (climbing nightshade): 129900022
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Entry
129900022 CDS
T09577
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
129900022
Enzymes [BR:
sdul01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
129900022
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Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
RhgB_N
Motif
Other DBs
NCBI-GeneID:
129900022
NCBI-ProteinID:
XP_055830985
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Position
8:60995534..61001503
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AA seq
613 aa
AA seq
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YQVVIDNGIVQLSLTNPTGAIFGVKYNGIDNLLEPLQETQRGYWDTVWNGKFDTLFASKF
SVISQDVNKVEVSFQKTHDPLNGNNPPLNVDKRYVMLRGSSGFYSYGIFEHLKGWPALNL
DEARIAIKLSKSLFHFMAISDDRQRIMPSEEDRASGQTLDFIEAVKITNPSNPRLKNEVD
DKYQYSDEVRNIKVHGWISDTPHLGFWVISPSYEYCNGGPMKQDLTSHVGPTSMAIFFSG
HYAGPQLGVSLTNGEAWTKVFGPVFFYVNSDSSNDHTILWEDAKRQMNEETKKWPYDFPA
SVDYLHANQRGSVSGQLMVHDWYINKVAFPALNAYIGLAKPGIAGSWQTETKDYQFWTQT
DNSGNFKINNVRPGIYGLYSWVPGVMGDYKFSSNVIVTQGKDTNLGQIVFEAPRNGPPLW
EIGFADRTANEFFIPDPLPGLQNYLYINTTVHKFRQYGLWDRYTDLYPNGDLVYKVGVSD
FRKDWFFAHVNRRNKDRSFSPTTWQIVFDVKKVDSSGTYHLHIALASASYAHLLVWINNP
SIPRPWFDSSPIGMSNAIARHGIHGLYMIFNIEFPGTKLHIGENIIYLKQASAYGPFTGL
MYDYIRLESPSTR
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
tatcaggtggtaattgataatggcattgtgcaactttctctaactaatcccactggtgct
atttttggagttaaatataatggcattgataatctccttgaacccttacaagaaacacaa
aggggatattgggatactgtgtggaacgggaaatttgacacgctttttgcgtcaaaattt
agtgtgatatcacaagatgttaacaaagttgaagtttctttccaaaaaacacatgatcct
ttgaatggtaacaatcctcctctaaatgttgacaaaaggtatgtgatgctacgtgggagt
tctggattttattcatatggaatatttgaacatttaaaaggatggccagcactaaatttg
gatgaagctagaattgctattaagctcagcaaatcactgtttcattttatggcaatatca
gacgatagacaaaggataatgccatcagaagaggaccgtgcaagtggtcaaacacttgat
tttatagaagctgttaaaattacaaatccatccaaccctagactaaaaaatgaggttgat
gacaagtaccaatattcagacgaggttagaaatattaaagttcatgggtggataagtgat
actccacacttggggttttgggtaatttcaccaagttatgaatattgtaatggtggacct
atgaagcaagatcttacctctcatgttggtccaacatctatggctatatttttcagtggg
cattatgcagggccacaattgggagtttcattaacaaatggagaggcatggactaaagtt
tttgggcctgtatttttctatgttaattcagattctagcaatgatcataccatactttgg
gaagacgctaaaagacagatgaatgaagaaacaaaaaaatggccctatgattttcctgca
tcagtagattatctccatgcaaatcaacgtggctcagttagtggtcaattaatggttcat
gactggtacataaacaaagttgcttttcctgcattaaatgcatatattggacttgcaaaa
cctggaattgctggatcttggcaaactgagaccaaggattatcaattttggactcaaact
gataattctggtaacttcaagataaataatgttagacctggaatttatggattatattct
tgggtccctggagttatgggagattacaagttctcttctaatgtgatcgtcacacaagga
aaggacacaaacttaggtcaaatagtttttgaagctccaagaaatggtccaccattatgg
gaaattggatttgcagatagaactgctaatgaattttttatacctgatccattgcctggt
cttcaaaattatttgtacattaacactactgtacataagtttagacaatatggtttatgg
gatcgttacactgatttatatcctaatggagatttagtgtacaaagttggtgttagtgat
tttcgaaaagattggttctttgcccatgtaaacaggagaaataaggacaggagtttttca
ccaacaacatggcaaattgtatttgatgttaaaaaagtggattctagtggcacttatcat
cttcatatagctttggcttctgcatcttatgcccatttgctagtgtggataaataatcca
tcaataccaaggccatggtttgatagttcaccaattgggatgagtaatgcaatagcaaga
catggaattcatggattatatatgattttcaatattgaatttccagggactaagcttcat
attggtgaaaatataatatatttgaagcaagcatcagcttatggcccttttactggactc
atgtatgattatattcgtcttgaaagcccttcgacacgatag
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