Solanum dulcamara (climbing nightshade): 129900602
Help
Entry
129900602 CDS
T09577
Name
(RefSeq) DNA mismatch repair protein MSH2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
129900602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdul03400
]
129900602
DNA repair and recombination proteins [BR:
sdul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
129900602
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
Glyco_hydro_57
DUF2465
Motif
Other DBs
NCBI-GeneID:
129900602
NCBI-ProteinID:
XP_055831587
LinkDB
All DBs
Position
8:complement(70619875..70629051)
Genome browser
AA seq
943 aa
AA seq
DB search
MDEKFEEQGKLPELKLDARQAQGFLSFFKTLPKDLRAVRLFDRRDYYTAHGDDATFIAKT
YYHTTTALRQLGNGVGALSSVSVSRNMFETIARDILLERMDRTLELYEGSGSNWRLVKSG
TPGNFGSFEDILFANNEMQDSPAIVALAPKFDQNGCTVGLGYVDITKRVLGLAEFLDDSH
FTNLESALVALGCRECLVPTETGKSSDSRPLYDAISRCGVMVTERKKTEFKGRDLVQDLG
RLVKGSVEPVRDLVSSFECAAGALGCILSYAELLADESNYGNYTVKQYNLNSYMRLDSAA
MRALNVMESKSDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVDEINCRLDLVQAF
VEDAALRQDLRQHLKRISDIERLTHNLERKRASLLHVVKLYQSGIRIPYIKSVLERYDGQ
FATLIRERYIDSLEKWSDDNHLSKFIALVETAVDLDQLENGEYMISSAYDPSLSALKDEQ
ESLEQQIHNLHKQTANDLDLPIDKSLKLDKGTQFGHVFRITKKEEPKVRRQLNSHYIVLE
TRKDGVKFTNTKLKKLGDRYQKILDEYKSCQKELVARVVQTVASFSEVFEGIAGSLSELD
VLLSFADLASSCPTAYSRPSISPPDTGDIILEGCRHPCVEAQDWVNFIPNDCKLVRGESW
FQIITGPNMGGKSTYIRQVGVNVLMAQVGSFVPCDNATISIRDCIFARVGAGDCQLKGVS
TFMQEMLETASILKGATNRSLIIIDELGRGTSTYDGFGLAWAICEHIVEEIKAPTLFATH
FHELTALANENGKNGHKQIAGVANFHVSAHIDSSSRKLTMLYKVQPGACDQSFGIHVAEF
ANFPRSVVALAREKASELEDFSPNAMMPNDCKEAVSKRKREFDPHDVSRGTARARQFLRD
FTQLPLDKMDLKQALQELSKMKTDLEKNAVDSQWLQQFFSSSD
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaaaatttgaggaacagggcaagcttcccgagcttaaacttgatgctaggcaa
gctcaagggtttctctcattcttcaaaaccctacccaaggaccttagggcagttcgtctc
tttgatcgtcgggactattatactgctcatggagatgatgcaactttcattgcaaagaca
tattaccataccacaactgctttgcgacagttgggtaatggagttggtgctctttccagt
gttagtgtgagtagaaacatgtttgaaacaatagctcgtgacattctgttggagcggatg
gatcgtactcttgaattgtatgagggcagtggttcaaactggagattggtcaaaagtggc
accccaggaaattttggaagttttgaggatattctgtttgctaataatgaaatgcaagat
tctccggctattgttgctcttgcgccaaaatttgatcagaatggatgtacagttgggtta
ggctatgttgatattactaagagagtccttggtttagcagaatttctagatgatagccac
ttcaccaatttggagtctgctttggttgctcttggttgcagagaatgtcttgtaccaaca
gagactgggaaatccagtgacagcaggcctctgtatgatgcgatatcgagatgcggggtg
atggtaactgaaagaaagaaaactgaatttaaagggagggatttggtacaagatcttggt
aggctcgtcaagggttcagtagaacctgttagagatttagtctctagttttgaatgtgca
gcaggcgctttggggtgcatactttcctatgcagaactacttgcggatgagagcaactat
ggaaactacacagtcaaacagtacaacctcaatagttacatgagattagattctgctgct
atgagagcactgaatgttatggagagcaaatcagatgctaataaaaattttagcttgttt
ggtctcatgaatagaacctgtactgctggaatgggtaaaaggttattgcacatgtggctg
aaacagccgttactagatgtagatgagattaactgtagactggatttagttcaagcattt
gtggaggatgctgcacttcgccaagatttgaggcagcatctgaaaagaatttcagatatt
gagcggctgacacacaatcttgagaggaaaagagccagtttactgcacgttgtaaaactc
tatcagtcaggcatcagaataccatatatcaaaagtgttttggaacgttatgatgggcaa
tttgcaacactaatcagggaaaggtatattgattctcttgagaaatggagtgatgataat
cacctgagtaagttcattgctcttgtggaaactgctgttgaccttgatcaacttgagaat
ggagagtacatgatttcttctgcatatgacccaagtttatctgctctgaaggatgagcaa
gagtcattggagcaacagattcataatttgcacaaacaaactgccaatgatcttgatcta
cctattgataagtctcttaaactagataaaggaacacaatttggacatgtcttcagaatt
accaagaaagaagaaccaaaagtcaggaggcagctaaattctcactacattgttcttgaa
acacgtaaggatggggtaaagttcaccaatacaaaactcaaaaaactaggagatcggtac
cagaagatcttagatgagtataagagctgtcagaaagaactggtagctcgggttgttcaa
acagttgcgagtttctccgaggtgtttgaaggtatagctgggtcactttctgagttggat
gtgctactgagttttgctgatttggcttccagttgcccaactgcctactcaagaccaagt
atcagtccaccagatacgggagacattatacttgaagggtgtagacatccttgtgtggaa
gctcaagactgggtcaacttcatccctaatgactgtaaactagttaggggagaaagttgg
tttcagattatcacaggccctaacatgggtggaaagtcgacctacattcgtcaggttggt
gtgaatgtcctgatggcccaagttggctcatttgttccatgcgacaatgctaccatttct
attcgcgattgcatttttgctcgtgttggcgctggagattgccagctgaagggggtttct
acttttatgcaagagatgcttgagactgcatcaatcttgaaaggagctactaatagatca
ttgattataattgatgagttgggccgtgggacgtcgacttatgatggctttggtttagct
tgggctatttgtgagcacattgttgaagaaattaaagcaccaacattgtttgcaactcac
tttcatgagctgactgcattggccaatgagaatggaaagaatgggcataagcaaattgct
ggtgtggcaaattttcatgtcagtgctcacattgactcttctagtcgcaagctaactatg
ctttacaaggttcaacctggtgcttgtgatcaaagttttggtattcacgttgcagagttt
gccaattttccacgaagtgttgtggccctggccagagaaaaggcatctgagttggaggat
ttctctcctaatgctatgatgccaaatgactgtaaagaggcagtctcaaagcggaagagg
gaatttgacccacatgacgtgtctagaggtactgcccgagctcgtcaattcttacgggat
tttactcagttgccactggataagatggatttaaagcaggccttgcaagagttgagcaaa
atgaagaccgaccttgagaagaatgcagttgacagtcagtggcttcagcaattctttagt
tcttcagattag
DBGET
integrated database retrieval system
