Solanum dulcamara (climbing nightshade): 129900784
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Entry
129900784 CDS
T09577
Name
(RefSeq) exosome complex component RRP41-like isoform X1
KO
K12587
exosome complex component MTR3
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129900784
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129900784
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
129900784
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
129900784
NCBI-ProteinID:
XP_055831804
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All DBs
Position
8:5284071..5287340
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AA seq
267 aa
AA seq
DB search
MSKRGDNSFQKLMAGKTGSTPATYSPSPATHKKKRIPITDADWVRPDNRGFYQCRPAYLR
TGAVSTAAGSAYAEFGNTKVIVSVFGPRESKKAMMYSDTGRLNCNVSYTSFSTPNRGQGS
DNKELSSMLHKALEGVIILESFPKTCVDVFALVLESGGSDLPVVISCASLALADAGILLY
DLVASVSVSCLGKNLVIDPIFEEESYQDGSLMITCMPSRNEITQLIVTGGWSTPKINEAM
ELCLGACFKLGEVMRSCLKDAVTDLKE
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcgaggggacaattcttttcagaagctgatggctggaaaaacagggtcgacg
ccagcgacctattcaccatctccagcaacgcacaagaagaagagaatccccattactgat
gctgattgggttcgtcctgataatcgtggcttctatcagtgccgtcctgcttatctgagg
actggtgctgtgagtactgctgcaggatcagcatatgcagagtttggaaacaccaaggtc
atcgtatctgtgtttgggccaagggaaagtaagaaagcaatgatgtacagtgatacagga
cgcttaaattgtaatgttagttacacaagtttttccacccctaatcgtgggcagggatca
gacaacaaggaactttcctcaatgttacacaaagctttagagggtgttataattctggaa
tccttcccaaagacttgtgtggatgtttttgctttggtattggaatccggtggaagtgat
ctccccgtggtcatatcatgtgctagtctagctttagcagatgcaggaattttgctgtat
gacttggttgcctcagtttcggtatcttgtcttggaaagaaccttgtcatcgatcccatt
tttgaggaagaaagctaccaagatggaagcttaatgataacttgtatgccttcgcgtaat
gagatcactcaactgattgtaactggaggatggtcaacaccaaagattaacgaggcaatg
gagctatgccttggtgcttgcttcaaacttggagaggtaatgagatcatgtttaaaagat
gctgtcactgatttaaaagaatag
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