Solanum dulcamara (climbing nightshade): 129900787
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Entry
129900787 CDS
T09577
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul04142
Lysosome
sdul04144
Endocytosis
sdul05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
129900787
04142 Lysosome
129900787
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
129900787
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sdul04131
]
129900787
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sdul04147
]
129900787
Membrane trafficking [BR:
sdul04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
129900787
Exosome [BR:
sdul04147
]
Exosomal proteins
Proteins found in most exosomes
129900787
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_Vps41
IcmW
Motif
Other DBs
NCBI-GeneID:
129900787
NCBI-ProteinID:
XP_055831809
LinkDB
All DBs
Position
8:complement(17915984..17928369)
Genome browser
AA seq
1701 aa
AA seq
DB search
MAAANAPITMKETLTLQSIGVNPQFITFTNVTMESDKYICVRETAPQNSVVIIDMNMPMQ
PLRRPITADSALMNPNSRILALKAQVLGTSQDHLQIFNIEAKQKLKSYQMPEQVVFWKWI
TPKMLGLVTQTSVYHWPIEGDSEPIKMFDRTANLANNQIINYRCDPSEKWLVLIGIAPGS
PERPQLVKGNMQLFSVDQQRSQALEAHAAAFASFRVPGNERDSILISFATKSSNAGQVTS
KLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYSLIYVITKLGLLFVYDL
ETATAVYRNRISPDPIFLTAEASSIGGFYAINRRGQVLLATVNDATLVPFVSGQLNNLEL
AVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQ
AGQTPPLLQYFGTLLTKGKLNSFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLV
KTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRSDPQ
GAVNFALMMSQMEGGCPVDYNTITDLFLQRNMIREATAFLLDVLKPNLPEHGFLQTKVLE
INLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYVRALQHYSELPDIKRVIVNTHAI
EPQALVEFFGTLSREWALECMKDLLVINIKGNLQIIVQVAKEYCEQLGVDACIKLFEQFK
SYEGLYFFLGSYLSSSEAADIHFKYIESAARTGQIKEVERVTRESNFYDAEKTKNFLMEA
KLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPE
DFIKGLILSVRSLLPVEPLVEECEKRNRIRLLTQFLEHLVSEGSQDVHVHNALGKIIIDS
NNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARY
VVERMDGDIWEKALNPENEFRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIE
LLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEVAVEAQLYE
EAFAIFKKFNLNVQAVNVLLDNIRDINRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIE
SFIRADDTTHFLDVIRAAEDADVYHDLVKYLLMVRQKTKEPKVDSELIYAYAKIDRLGDI
EEFILMPNVANLPNVGDKLFDEGLYEAAKIIFAFISNWAKLASTLVKLNQFQGAVDAARK
ANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEFYQNRGCFNELISLMESG
LGLERAHMGIFTELGVLYARYRHEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYI
QYDEFDNAATTVMNHSPDAWDHMQFKDIVVKVANVELYYKSVHFYLQEHPDLINDLLNVL
ALRVDHTRVVDIMRKAGHLRLVKHYMIAVQSNNVSAVNEALHEIYVEEEDYDRLRESIDL
HDNFDQIGLAQKIEKHELLEMRRVAASIYKKAGRWKQSIALSKKDNLYKDAMETASQSGD
RELAEELLVYFIEQGKKECFASCLFVCYDLIRPDVALELAWMNNMIDFAFPYLLQFIREY
TGKVDELIKDKIEAQSEAKAKENEEKDVMKQQNMYAQLLPLALPAPPMPGMGGGFSAPPP
PMGGMGMPPMPPFGMPPMGPY
NT seq
5106 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgccaacgctccgatcaccatgaaagagactctcacgttgcaaagtataggg
gtgaacccacagttcataacattcaccaatgttaccatggaatcggataagtatatatgt
gtaagagagacggcgcctcagaatagtgtggtcattattgatatgaacatgccaatgcaa
cctttgaggcgcccaattacggctgactctgctcttatgaatcctaattctagaattttg
gctctaaaagctcaagttcttggaaccagtcaagatcacttgcagatattcaatattgag
gcaaaacagaaattgaagtcatatcagatgcctgagcaggttgttttctggaaatggatt
acaccgaagatgttaggtcttgttacacaaacgtcagtctatcattggccaattgaaggg
gattctgagcctataaagatgtttgatagaacggccaatttagccaacaaccaaataatc
aactaccgatgtgatccttctgagaaatggttggttttaatcggtattgccccaggttca
ccagagaggcctcaactggtcaaaggaaacatgcaattattttcagtggatcagcaacgc
agtcaagcactcgaggcacacgctgcagcatttgcctcattcagggttcctggaaatgaa
agggattccatactcatttcctttgccacgaagtcctcaaatgctggacaagtcacatca
aagttgcatgtcattgagcttggagcccagccagggaaaccgtcttttacaaagaaacag
gcagatctcttctttcctccagattttgctgatgatttcccagttgccatgcagatatct
cataaatacagtttaatttatgtcatcacaaagcttgggcttctctttgtctatgacctc
gaaacagctactgcagtgtacagaaataggatcagcccagatcctatttttctgacggca
gaagcttcatctattggtggtttctatgccatcaacaggcgaggccaagtgttgcttgcc
acagttaatgatgcaactctagtaccttttgtcagtggccaattgaataatctggagctt
gctgtcaatcttgccaaaagaggaaaccttcccggggctgagaatttagttgtccagcga
ttccaagagttgtttgcccagacaaagtacaaagaagctgcggagcttgcagcagaatca
cctcaaggcatactccgtacgcctgacactgttgccaaatttcagagtgttcctgttcaa
gcagggcaaacacctcccttattgcagtactttgggactcttttaacaaaaggaaagcta
aattcttttgaatctctggaattgtcgcgccttgttgtcaaccagaacaagaaaaacctg
ttggagaactggttggctgaggataagctggagtgtagtgaggaacttggggatcttgtg
aagactgttgataatgaccttgccctaaagatatatatcaaagcaagagcgactccgaag
gttgttgctgcttttgctgagcgcagggagtttgacaagattcttatatattccaagcag
gttggatatacacctgactatttgttcctccttcaaacaattcttagatctgatcctcag
ggagctgttaactttgcgctcatgatgtcccaaatggagggcggttgtcctgttgattac
aacactatcaccgatctatttctgcagaggaacatgatccgtgaggcaacagcattttta
ttggatgttctcaaacctaaccttccagagcatggctttctgcagactaaggtcttggaa
atcaacctcgtgactttcccaaatgttgctgatgctatattagcaaatggaatgttcagt
cattatgatcgacctcggattgctcaactttgtgagaaagctggtctttacgtgcgggct
ctgcagcactattctgaactgcctgatatcaagcgcgtcattgttaatacacatgcaatt
gagcctcaggccttggttgagttttttgggaccctttcacgtgaatgggcccttgagtgc
atgaaggacctccttgttatcaatatcaaaggaaaccttcaaataattgttcaggttgca
aaagagtactgtgagcagttgggtgttgatgcttgcataaagctttttgagcaatttaag
tcctatgaggggttatatttcttcctgggatcatatttgagttccagtgaggctgctgat
atccactttaaatatatcgagtcagctgccagaactggtcaaatcaaggaggttgagcgt
gtcacaagagaatcaaacttctatgatgcggaaaagacgaagaacttcttgatggaagcc
aaacttcctgatgctcggcctctaattaatgtttgtgaccgctttggttttgttcctgac
ctcacacactacctctataccaacaatatgcttcggtatattgaaggttatgtccaaaag
gtcaatccaggaaatgcacctttagttgtagggcagcttttagatgatgagtgtcctgag
gattttattaagggattgatcctgtctgtgcgttctctgcttccagttgagcccctagtg
gaagaatgtgaaaaaaggaatcggatccgcttgctgacacagtttttggagcatcttgta
agtgaaggaagtcaagatgtgcatgtacacaatgctctgggaaagatcatcatagatagc
aataacaacccagagcacttcctcacaaccaatccatactatgactcacgcgttgttggt
aaatattgtgaaaaacgtgatcctacccttgctgttgttgcatatagaagaggtcaatgt
gatgatgaacttattaatgtgacaaacaagaactctttgttcaaacttcaagcaaggtac
gtggttgagaggatggatggtgatatttgggagaaagctcttaaccctgaaaatgagttt
agaaggcagcttattgatcaagttgtttccactgctctgcctgaaagcaagagccctgag
caagtttcggcagctgttaaagctttcatgactgctgatcttccccatgaactgattgaa
cttcttgaaaagattgtgctccagaattctgcattcagtgggaactttaatctgcagaat
ttgcttatcctgacagccatcaaagctgatccatccagagtaatggactacatcaataga
cttgataattttgatggacctgcagtaggggaggttgctgtcgaagcgcaactttatgaa
gaagcttttgcaatcttcaagaagttcaacttgaatgtccaagctgttaacgttctgctt
gacaacattcgcgatattaaccgggctgtggagtttgcgttccgagttgaagaagatgct
gtttggagtcaggtggctaaagctcaactaagagaaggattagtgagtgatgctattgag
tcgtttattcgtgcagatgacaccacccactttttggatgtaattcgtgctgcagaggat
gcggatgtttaccatgacttggtgaagtatctgctgatggtaaggcagaagacaaaggag
cctaaagttgacagtgaactcatttatgcatatgccaaaattgatcgattgggtgacatt
gaagagtttattctcatgcccaatgttgctaatctacctaatgttggtgataagttgttt
gatgaaggcttatatgaggctgcgaagatcatatttgctttcatttctaactgggccaag
ttggccagcacacttgtgaagttaaatcaatttcaaggtgctgttgatgcagcacgcaag
gcaaatagtgcgaagacatggaaagaagtctgctttgcttgcgtcgatgcggaggagttc
cgtttggctcaaatttgtgggcttaacattatagtgcaggtggatgacttggaggaagtt
agtgaattttaccaaaatagaggatgttttaatgaattgatctctcttatggagagtggg
ctgggtttggagcgtgcacatatgggtatcttcacagaacttggtgttttatatgccaga
taccgtcatgagaagctcatggagcacattaaattattctccaccagactcaacattccc
aagcttattcgtgcctgcgatgaacagcaacactggaaggaactcacgtatttgtacatc
caatatgatgaatttgataatgctgccaccactgttatgaatcattctccagatgcctgg
gatcatatgcagttcaaagacattgttgtcaaagttgctaatgtggagctttattacaag
tctgtccacttttatttgcaagagcatcctgatctcattaatgaccttctaaatgttctt
gcacttagagtggatcacacacgcgttgtggacataatgagaaaggctggtcaccttcgc
ctagtcaagcattacatgattgctgttcagagcaacaatgtttctgcagtgaatgaggca
cttcacgaaatttatgttgaggaagaagactatgatagactacgtgaatcaattgatttg
catgataacttcgatcagattggccttgctcagaagatagagaaacatgagcttcttgag
atgaggcgtgttgctgcttctatctataagaaagctggtaggtggaagcaatctattgct
ctgtcaaagaaagataatctctataaagatgctatggagacagcctcacaatctggagat
cgcgaacttgcagaggagttgcttgtttacttcatcgaacagggaaagaaagaatgcttt
gcatcatgcctgtttgtttgttatgatttgattcggccagatgttgcccttgagcttgcc
tggatgaataatatgattgactttgcattcccttacctgttacagtttatccgtgaatac
actggcaaggttgatgagctaataaaagataagattgaagctcaaagtgaagcaaaagcc
aaagagaatgaagagaaggatgttatgaagcagcagaatatgtatgcacagctgctgcca
ttggctttgcctgctccaccaatgccaggtatgggaggaggcttttctgcgcccccccct
ccaatgggtgggatgggaatgcctcccatgcctccatttggcatgccacccatgggtccc
tactaa
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