Solanum dulcamara (climbing nightshade): 129901086
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Entry
129901086 CDS
T09577
Name
(RefSeq) probable pectate lyase 8 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul00040
Pentose and glucuronate interconversions
sdul01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
129901086
Enzymes [BR:
sdul01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
129901086
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
129901086
NCBI-ProteinID:
XP_055832177
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Position
8:78307208..78313677
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AA seq
434 aa
AA seq
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MAAAMRLSCLCFLQLLIVIILFINSSADNSIEEAELFQSLSNSTMANRLSENDELRHEHA
VDDPEAIASMVDISIRNSTERRKLGYFSCTTGNPIDDCWRCDRHWQRNRRRLADCSIGFG
RNAIGGRDGRFYVVTDAGDDDPVNPRPGTLRHAVIQDEPLWIVFKRNMLITLKQELIMNS
FKTIDARGVNVHIAYGACITIQFVTNIIIHGLHIHECKPTGNAMVRSSPSHYGWRTMADG
DAISIFGSSHIWIDHNSLSNCADGLVDAIMGSTAITISNNYFTHHNEVILLGHSDSYVRD
KVMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRYLA
PVNPFAKEVTKRVEPWEGSWRHWNWRSVGDLMLNGAYFTASGLAAPGSYARASSLAAKSS
SMVGMITSNAGALS
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgctatgagattatcatgtttgtgttttcttcaattgctaattgtgatcata
ctattcatcaattcttctgccgataacagtattgaagaggcagagctatttcagagttta
agtaactcgactatggcgaacaggttaagtgaaaacgatgaacttaggcatgaacatgct
gtagatgatccagaagccattgcttccatggtggatatcagcattaggaatagcacagag
aggaggaaactgggttacttctcatgtacaacgggaaatcctattgatgattgttggcga
tgcgatcgccattggcaacgtaatcgcagacgcttagctgactgttcaatcggctttgga
cgcaatgccattggtggccgagatggcaggttttatgttgtgactgatgcaggtgatgac
gacccagtaaatccccgacctggaacacttcgtcatgctgtaattcaagatgaaccattg
tggatagtgtttaaacgtaatatgctcatcacccttaagcaagaactgatcatgaacagt
ttcaagacaatcgatgctcgtggtgtgaacgtgcatatcgcgtatggggcttgtataact
atccaatttgttactaatattatcattcacggtctccatattcatgagtgtaaaccaact
ggtaatgccatggttagaagctcaccatcacactatggttggaggactatggctgatggt
gatgccatttccatttttggttcgagtcatatttggatcgatcacaactctctttctaat
tgtgctgatggtctcgttgatgctatcatgggttcaactgcaattaccatttcaaacaat
tacttcacccatcacaatgaggtgattttattggggcacagcgactcctatgtaagagat
aaggttatgcaggtgactattgccttcaaccattttggtgagggcctcatccagagaatg
ccaagatgcaggcatggttatttccatgtagtgaacaatgactacacgcactgggagatg
tatgccattggtggcagtgctgctcctacaattaacagccagggcaacagataccttgcc
ccagtgaacccttttgccaaagaggtgacaaaaagagtggaaccatgggaaggatcatgg
agacactggaactggagatcggtgggagaccttatgttgaatggagcatactttactgca
tccggacttgctgctccaggcagctatgcaagagcctcaagtttagctgctaagtcctct
tccatggtcggaatgataacctcaaatgctggtgcactttcttga
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