Solanum dulcamara (climbing nightshade): 129901271
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Entry
129901271 CDS
T09577
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129901271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129901271
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129901271
mRNA degradation factors
5'-3' decay
Lsm complex
129901271
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
129901271
NCBI-ProteinID:
XP_055832379
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Position
8:complement(68287505..68293137)
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AA seq
128 aa
AA seq
DB search
MSWASPEDIYLSTSLASYLDKKLLVLLRDGRKLLGTLRSFDQFANAVLEGACERVIVGEI
YCDIPLGLYIIRGENVVLIGELDVDKEELPPHMTRVPEAEIRRAQKAEREATDLKGTMRK
RMEFLDMD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggcaagtccagaagatatctatctctctacttctcttgctagctatcttgat
aagaaacttctcgtgttgctgcgagatggccggaagcttttggggacacttcgttctttt
gaccaatttgctaatgctgttctagaaggtgcatgtgagcgtgttattgttggtgaaatc
tactgtgatattccgttaggtctttatattataagaggggaaaatgtcgtgttaattggc
gagttggatgtagataaggaggaacttccaccccacatgactcgtgtcccagaagctgag
ataagaagggcccaaaaagcagaaagggaggctacagatcttaaaggtacaatgagaaag
aggatggaattccttgatatggattga
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