Solanum dulcamara (climbing nightshade): 129901313
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Entry
129901313 CDS
T09577
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03022
Basal transcription factors
sdul03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
129901313
09124 Replication and repair
03420 Nucleotide excision repair
129901313
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdul03021
]
129901313
03400 DNA repair and recombination proteins [BR:
sdul03400
]
129901313
Transcription machinery [BR:
sdul03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
129901313
DNA repair and recombination proteins [BR:
sdul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
129901313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
129901313
NCBI-ProteinID:
XP_055832432
LinkDB
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Position
8:complement(71995243..72001110)
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AA seq
290 aa
AA seq
DB search
MTPISSKLYADDVSLLMVLLDTNPYFWSSMKNTAFTFSKFLSHVLSFLNSILLLNQMNQV
VVIATGYNSCDYVFDSSTSSMQRAECLLEKLEDFVDKDESLSEEDSVDGVGFSLLSGSLS
MALCYIQRVFRSGPLHPQPRILCLHGSPDGPGQYVAVMNSIFSAQRSMVPIDSCVIGSQH
SAFLQQASYITGGVYLKPQVSDGLFQYLSTVFATDLHSRSFLQLPRPVGVDFRASCFCHK
NTIDMGFICSVCLSIFCKHHKKCSTCGSNFGEARKQDPSASDQRRTPDSS
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atgactccgatttcatcaaaactctacgcagatgatgtgagcctattgatggttctgctc
gatacaaatccctacttctggagctcaatgaagaacactgccttcacattctctaaattc
ttatctcatgttctttccttcttgaattcgatacttttactgaatcagatgaaccaggtg
gttgtgattgcaactgggtacaattcatgtgattatgtattcgattcgtctacttcatca
atgcaaagggctgagtgcttgttggagaaactggaggattttgtggataaagatgagtcc
ttgagtgaagaagactctgttgatggagttggattttctctgctttctggttcactttct
atggctttgtgctatattcaacgggtgtttcgttcaggtcctcttcatccacagcctcgg
atattgtgtctgcatggatctccagatgggcccggacaatatgttgcagtcatgaattca
attttctcagctcaacgttcaatggtacccattgattcgtgtgtaataggatctcagcat
tctgcttttcttcagcaggcttcttacataactggtggtgtatatttgaaaccccaagta
tcagatggactgtttcaatatctctctacagtttttgcgactgatttacattctcggagc
tttttgcaacttcccagacctgttggagttgactttcgcgcatcgtgcttttgccataaa
aacactattgatatgggtttcatatgctctgtttgtttatcaatattctgcaagcatcac
aagaaatgctcaacatgcggatcaaattttggagaggcacgaaagcaggatccctcagcc
tcggatcagaggaggactccagatagtagttga
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