Solanum dulcamara (climbing nightshade): 129901381
Help
Entry
129901381 CDS
T09577
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129901381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdul03041
]
129901381
03009 Ribosome biogenesis [BR:
sdul03009
]
129901381
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129901381
Spliceosome [BR:
sdul03041
]
Complex A
U1 snRNP components
U1 related factors
129901381
Complex B
129901381
Ribosome biogenesis [BR:
sdul03009
]
Eukaryotic type
Pre-60S particles
Helicases
129901381
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
129901381
NCBI-ProteinID:
XP_055832546
LinkDB
All DBs
Position
1:complement(75402764..75414818)
Genome browser
AA seq
501 aa
AA seq
DB search
MSRYDSRPADPGSYRHRRSDSGFGGGSTYRSSSSSRRDSEGKESPRKVDLDGLTPFEKNF
YVESPSIAAMTESEVEEYRQRREITVEGRDVPKPIKSFHDIGFPDYVLQEIEKAGFTEPT
PIQAQGWPMALKGRDLIGIAETGSGKTIAYLLPAIVHVNAQPFLAHGDGPIVLVLAPTRE
LAVQIQQEATKFGASSRIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTN
LRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLFNAY
KVIIGSADLKANHAIRQHVEIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQVTRQ
LRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKFVINYDFPG
SLEDYVHRIGRTGRAGASGTAYTFFTAANARFAKDLVNILEEAGQKVGPELAKMGRGAPP
PPGHGGFRDRGRGYGGNRQWS
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgatacgacagccgtccggccgaccctggctcttaccgccaccgtcgcagtgat
tcgggcttcggtgggggctcaacttataggtcatcatcatcgagcaggagagattccgag
ggtaaggagtctccacggaaggttgatttggatggattgactccattcgagaagaatttc
tatgttgaatcaccatccatagcagcaatgactgaaagcgaggtggaagagtatagacaa
cggcgggagatcactgttgagggccgtgatgtgcccaagcctataaagtcctttcatgac
ataggatttccagattatgtcttgcaagaaattgaaaaggctggcttcactgaacctaca
cctattcaagctcaaggttggcctatggccttgaagggtcgcgatctcattggtatagca
gaaacagggtctgggaagacaattgcttatctgttgcctgcaattgtgcacgttaatgcc
cagccatttttagcgcatggagatggtccaattgtcttagtgttagccccaactcgtgaa
cttgctgttcagattcaacaagaagctactaaatttggtgcatcatcacggattaagaat
acctgcatttatggtggggttccaaaggggccccaagttcgtgatcttcagaaaggtgtt
gaaattgttattgccacacctggaaggttgattgatatgttagaatctaatcatacaaac
ctgcgaagagtgacatatcttgtgctggatgaggctgaccgcatgctcgacatgggtttt
gaacctcagatccgcaaaatagtttctcagatacgcccagatcgtcaaacgctgtattgg
agtgctacatggcccaaagaagttgagcagcttgcaagacaattccttttcaatgcatac
aaagtgattattggttcagctgatctgaaagctaatcatgctattcgccagcatgtggag
atcgtctcggagagccagaagtataataaattagtaaagttgctggaagatattatggat
ggtagtcggattttaatattcatggacaccaaaaaggggtgtgaccaagtaactcggcag
ctccggatggatggttggcctgcactttctattcatggtgataagagtcaagcagaaaga
gattgggtcctttcagaattcaaagctggaaagtctcctataatgacagctacagatgtt
gctgctcgaggtctagatgtgaaggatgtaaaatttgtaatcaattacgattttcctgga
tcattggaggactatgttcatcgcattggtagaacgggaagggctggtgcctcagggaca
gcatacacattctttactgctgcgaatgctaggtttgcaaaggaccttgttaacattctt
gaggaggccgggcagaaagttggtcctgaattggcaaaaatgggacgtggtgctcctccc
cctccaggtcacggagggtttcgagaccgtggaaggggttatggaggcaataggcaatgg
agctag
DBGET
integrated database retrieval system
