Solanum dulcamara (climbing nightshade): 129901386
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Entry
129901386 CDS
T09577
Name
(RefSeq) polygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul00040
Pentose and glucuronate interconversions
sdul01100
Metabolic pathways
Module
sdul_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
129901386
Enzymes [BR:
sdul01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
129901386
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Arm-DNA-bind_5
Motif
Other DBs
NCBI-GeneID:
129901386
NCBI-ProteinID:
XP_055832512
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Position
8:complement(664513..667945)
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AA seq
408 aa
AA seq
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MAIPKGLEINNVGLILLFGIAILSSKVAECASFGYRRGLLETVFDVTKYGARPNPTADST
RGFMMAWRSACQSTGPAKVVIPAGTFTTGETIFQGPCKCPKPITIEILGTVLSNTDISLY
SRASWISIEHVDGVVITGGGTLNGQGNASWQYVDKNGNNAPLPTSLLFQTVKESSINNIN
FVDSKGVHLKVTDSNDISVSKIKITAPGTSPNTDGIHISETFNINITDSNIGTGDDCISV
GHGTSNIIVSSITCGPGHGISIGSLGKRPNEKDVKGIVIKNCTFHSTTNGARIKTYMASS
PLQVSDVVYEDIVLDDVKNPIVIDQHYNSKNKNEPSKVKLTDIHFKNIRGTTNSKAPVAL
NCSEALPCERIELVDIDLAPSGSTGPLLAARCQNAKTVFSGKTNPGAC
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggctattccaaaaggcttagaaatcaataatgtaggattgatcttactttttggtata
gccattttatcatcaaaagttgcagaatgtgcatcttttggttatcgtcgtggccttttg
gagacagttttcgatgttaccaagtacggagctagaccaaatcccactgcagatagcact
cggggatttatgatggcatggagatcagcttgccaatcaacaggcccagccaaagttgtt
attccagctgggacattcactacaggagaaactatatttcaaggcccatgcaaatgccca
aagcccattactattgaaattctagggactgtattgtcaaatacagacataagtttgtac
tcacgtgcctcatggatatctatcgaacacgtggatggtgtcgttattacaggtggcgga
actctgaatggacaaggaaacgcaagttggcagtatgttgacaaaaacggaaacaatgct
cctctccctacttctcttttatttcagacagtgaaggaatcttccatcaacaacatcaat
tttgtggattccaaaggtgtccacttgaaagttactgatagcaatgacatcagtgtttca
aaaatcaaaattacagcaccaggaacaagtccaaatactgatggaatacatataagtgaa
acatttaatatcaatatcactgatagcaacattgggacaggtgatgattgcattagtgtt
ggacatggcacttccaatattattgtctctagtattacttgtggccctggacatggaata
agcattggtagccttgggaaaagaccaaatgagaaggatgttaaaggaattgttataaaa
aattgtacattccacagtacaacaaatggtgcaagaatcaagacttatatggcttcatct
ccactacaagtttctgatgtagtttatgaagatattgtcttggatgatgttaaaaatcca
attgttattgatcaacactataattccaagaacaagaatgagccatcaaaggtgaaatta
acagatattcacttcaagaacataaggggcacaacaaattcaaaagctccagtggcactg
aattgcagtgaagcacttccttgtgaaaggattgaattggttgacattgatctagctcca
tctggttcaactggacctcttttagcagcaagatgtcaaaatgccaaaacagtattcagt
gggaaaactaaccctggtgcatgctaa
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