Solanum dulcamara (climbing nightshade): 129901458
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Entry
129901458 CDS
T09577
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
129901458
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdul03021
]
129901458
03036 Chromosome and associated proteins [BR:
sdul03036
]
129901458
Transcription machinery [BR:
sdul03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
129901458
Coactivators
SAGA/TFTC/STAGA complex
129901458
Chromosome and associated proteins [BR:
sdul03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
129901458
STAGA complex
129901458
TFTC complex
129901458
SAGA complex
129901458
SLIK complex
129901458
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_VPS8
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_Vps41
WD40_RFWD3
Tricorn_2nd
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_IP5PC_F
LisH_PAC1
PALB2_WD40
Dimer_MINDY4_N
WD_LRWD1
LisH
Cytochrom_D1
Beta-prop_ACSF4
RAB3GAP2_N
Motif
Other DBs
NCBI-GeneID:
129901458
NCBI-ProteinID:
XP_055832617
LinkDB
All DBs
Position
8:complement(66415307..66438120)
Genome browser
AA seq
673 aa
AA seq
DB search
MDEEEIEKAVVAYLKKKGFKQTEIAFQEEQQQNKSSIHNSNSANSQIDPDITKKIISFSE
FETGPQRYQEEYSKLRSWAYSSLDLYKHELLRVLYPVFIHCFMELVARGHIQEARAFFSS
YREDHEMTHLRDLQKLEGVLSPSHLEEMEFAHSIRLSKVNIKMCQYSYDLLLQYLHKTES
ITMLGIINERINFQVSPGQPGSISDDAEVVTLVASGHDASLINQREVHWGMLEDSLEERL
EKTGGSVPDSEKFDGDLKEGEVEENKKKSVEGGKQGAPLKKVKKDKVGVATGKSSRTESS
TVTTAPRVKPELALPAIPAEVELSILEDLRNRVQLSNASLPSVSFYTFVNTHNGLNCASI
SHDGSLVAGGFSDSSLKVWDMAKLGQETGPSFLQGGTDSPSREHVLGSSGGRRCYTLLQG
HSGPVYSASFSPYGDFLLSSSSDSTIRLWSTRLNANLVCYKGHNYPVWDVQFSPAGHYFA
SSSHDRTARIWSVDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVRSGDC
VRIFIGHRSMILSLAMSPDGRYMASGDEDGTVMMWDLSSGRCITPLVSHSSCVWSLAFSG
EGSLLASGSADCTVKLWDVTTSTKAPLKEENKSGSNNRLRSLKTLPTKATPVYALRFSRR
NLLFAAGAFSKSA
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagaagagattgagaaagcagtcgtagcgtatttgaagaagaagggtttcaag
caaacggagattgcttttcaagaagaacagcaacagaataaatcttcaatccacaacagc
aactcagcaaattctcagattgaccctgacatcactaaaaaaatcatttctttctctgaa
tttgaaaccggtccccaacgataccaagaagaatatagcaagcttcggtcatgggcttat
agttcactggatttgtataagcacgagttgcttcgtgttttgtatcctgtatttattcat
tgtttcatggaacttgtcgctagaggtcatattcaagaagcacgagcctttttcagtagt
taccgcgaagaccatgagatgacacatttgcgtgatcttcagaagttagaaggcgttctc
tcaccatcccatcttgaggaaatggaatttgctcattctatacggctgagcaaagtgaac
attaagatgtgtcagtactcctatgaccttttgttgcaatacttgcacaagacagaatct
attacaatgcttgggatcatcaatgagcgcattaattttcaagtttctcctgggcagcct
ggctctatatctgatgatgcggaagttgtaactcttgttgcaagtggccatgatgctagt
ctcataaatcagagagaagttcattgggggatgcttgaagattctttagaagaacggtta
gagaagacaggaggttcggttccagactcggaaaagtttgacggagatcttaaggaagga
gaagtggaagaaaacaagaagaaatcagttgaaggtggtaaacaaggtgcacctcttaaa
aaagtaaagaaggacaaagttggggttgcaacagggaaatcttctcgtacagagagcagc
acggtgacaactgcaccacgtgtcaaaccagaacttgctttacctgctatacctgcagag
gtagaactttcaattctggaagatttgaggaaccgtgtacagttgagtaatgcatcattg
ccctctgtcagcttctatacatttgttaatacacataatggactaaactgtgcatcaata
tcacatgatggatcactagtggctggtggattctcagactcatctctgaaggtctgggac
atggcaaagcttgggcaagaaactggtccatcttttttgcaggggggaaccgattcacct
tcacgtgagcatgtgcttggctcaagtggtggaagaagatgttatacattacttcagggc
cattcagggcctgtttattctgcatcctttagtccatatggggattttcttctgtcttca
tcatcagattcaacaattcgcttatggagcacaaggttaaatgctaatcttgtttgctac
aaaggccacaattacccagtatgggatgttcagtttagtccagctggacattattttgcc
agttcttcacatgaccgcactgcaaggatctggtctgtggacaggatacagcctctgaga
ataatggccggacacttatcagatgtagattgtgtgcaatggcatgcaaattgcaattac
attgctactggatcaagtgacaaaactgtacgcttgtgggacgtccggagcggcgactgt
gtcagaattttcattggtcataggagtatgatcctatcattggcaatgtctcctgatggt
cgatatatggcatctggtgatgaagatggaacagtcatgatgtgggatctctcaagtgga
cgttgtattactcctttggtcagtcattcctcctgtgtgtggtcacttgcttttagtggt
gaaggttcacttcttgcatctggctctgctgattgcactgtaaaattatgggatgtaacc
acaagcaccaaagcgccactaaaagaagaaaacaaatctggaagtaacaacagactccgg
tcattgaagaccctgcctaccaaagctactcccgtctatgctttgcgtttttcacgaaga
aatcttctatttgccgctggagctttctcgaaaagtgcatga
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