Solanum dulcamara (climbing nightshade): 129901544
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Entry
129901544 CDS
T09577
Name
(RefSeq) uncharacterized protein LOC129901544 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129901544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sdul03000
]
129901544
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129901544
04121 Ubiquitin system [BR:
sdul04121
]
129901544
Enzymes [BR:
sdul01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129901544
Transcription factors [BR:
sdul03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
129901544
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129901544
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
129901544
Ubiquitin system [BR:
sdul04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
129901544
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
zf-UDP
Rtf2
Motif
Other DBs
NCBI-GeneID:
129901544
NCBI-ProteinID:
XP_055832730
LinkDB
All DBs
Position
8:complement(8936682..8945222)
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AA seq
1055 aa
AA seq
DB search
MSEQGDKICPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKENTEGRCPACRTPY
NKEKIVGMEAKCDKVVAEMSTEKRLSSRKGKSKTADSRKQLSSVRVVQKNLVYIVGLPLS
LADEDQLLQRKEYFSQYGKVMKVSISRTAAGTIQHFANDTCSVYITYSREEEAILCIQSV
HGFVLDGRPLRACFGTTKYCHAWLRNVPCTNLDCLYLHEIGSQEDSFSKDEIISAYTRSR
VQQIAGAINSMQRRSGSVLPPPREEFCSNNSASANKPISKNAATNSAPSVRGSSSPPNSS
SGRSAALPAGALWGTRASNNQHPPASVPCSNGPLNKKPLTCNPTVFSTAVESTSQVSLLP
AYAGKKVVHTEESGTTQEKGKIEALEPVKQHVGADPRTYTSENLTILVPLASSSMNSQLH
SAPSMSLKDEEKQMIQTSSTNAFDISVKSNGPGFTKDSNDITDIKIQNVCLDMSSLSIGR
HKKSQGNCIDQNKESSPSELTEEYATSADEICITREKSDLRLDAQSKVTQVTTIEIENDL
LTLNEQRHRYPEVIIEKVNSPNLSLSLHSPAQPSGYTSQLTNDGGRIGANMQLDRRTDSV
SQPSRESSTNGYPENVSNCVADLHTIDRSYYPLPDEGKRMHVGKFQGEAHSENSSTNVDI
GESSIISNILSLDFDPWNESLTSPQNLAKLLGETDDQQGSVRVSNSRKLTSNQSRFSFAR
EEPTTNASADYQPSLNYIEQNFNHYHHGHDFPNRRNYQLDNIGTRNGFSMANNEETVGFG
NSFSHLSSNKLSVARPQMSAPPGFSAPNRAPPPGFTSHYERMEQNFDSFHASHLRDTSSL
HNIHQAPQVGHVTNGDIEFMDPAILAVGKGFPNGLHLSSLDMSSSCPPQSNTFQNEGTLQ
LLMQRSLTAHQNQSFADTRDMFSPFGDAYGISSRGVEQTLTNNQPPFDGISSRVLEQTLA
NNQPLFDGISSRVLEQTLANHQSPFLQLSLPQSRNSVMSNGHWDSWNGVQSGNSLGVAEL
LRTENLGFNKFFTGYEESKIHMSNSGNLYNRTFGL
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaacagggggataagatttgtcctctttgtgcggaggagatggatttgacagat
cagcagttgaagccttgcaagtgcggctacgagatatgtgtctggtgctggcatcacatt
atggatatggctgagaaggagaatacagaagggaggtgtccagcatgtcgcactccttat
aacaaggaaaagattgttggcatggaagcaaaatgtgacaaggtagtggctgagatgagc
actgagaaaaggttgtcttctcgcaagggaaaaagtaaaacagccgattctaggaagcaa
cttagcagtgttcgagtcgttcaaaaaaatcttgtttacattgtggggttgcctctcagt
ctagctgatgaagatcagcttctacagaggaaagagtatttttctcagtatgggaaggtt
atgaaggtgtctatatctcgtacagctgctggcactattcaacattttgcaaatgatact
tgtagtgtatatataacctattcaagggaggaggaagcaattctgtgtattcaatctgta
catgggtttgttttggatggtagacctctaagggcttgctttggaaccacaaaatactgt
catgcttggttgagaaatgtgccctgtaccaatcttgattgtttatacttgcacgagatt
gggtcgcaagaggatagctttagtaaagacgaaatcatttcagcttacacaaggagtaga
gttcaacaaattgctggtgccattaatagtatgcaacgacgatcagggagtgtgttacca
ccgccaagagaggagttctgcagtaacaactctgcgtctgcaaacaaacctattagtaaa
aatgctgcaactaattcagcacccagtgttagaggctccagctccccaccaaatagtagc
tctggtagatctgcggctcttcctgctggagctttatggggaacacgtgcatcaaataat
caacacccacctgccagtgtaccatgttctaatggacctcttaataagaagcctctgacg
tgtaacccaacggtattttctacagctgttgaaagcacaagtcaggtttcgttactgcct
gcctatgcaggaaagaaagtagttcatactgaagaaagtggaactactcaagagaaaggg
aaaatagaggctttagaacctgttaagcagcatgtaggagcagatcctcgaacctatact
tctgagaaccttactattctggtacctcttgcttcttcatctatgaacagtcagctacat
agtgccccgtccatgtctttgaaggacgaagaaaaacaaatgatacaaaccagtagtaca
aatgcctttgatatttctgtaaagtctaatggacctggttttaccaaagattccaatgat
atcacagatattaagatccagaatgtatgccttgatatgtcgtcattgagcattggtaga
cataagaaatcacagggcaattgcattgatcaaaataaggagtcctcgccatctgaattg
accgaggaatatgcgacttctgcagatgagatttgtatcacaagagagaagtctgaccta
agattggatgcacagagcaaagtaacacaagttactactattgaaattgagaatgatttg
ctaaccttaaatgagcagagacataggtatcccgaagtaattattgaaaaagtcaattca
cccaatctttccctttctttacactccccagctcagcctagtgggtatacctctcagctg
actaatgatggtggacgtattggggccaatatgcagttagacaggagaactgattcagta
tcacagccttctcgtgaatcatcgactaatgggtacccggagaatgtatcaaattgtgtg
gctgatttgcatactattgatagaagttattatccgttgcctgacgagggtaagaggatg
catgtgggaaagtttcaaggtgaagctcatagcgagaacagtagtactaatgtagatatt
ggagagagcagtataatatctaatattttgtccctggattttgatccttggaatgagtca
ttaacttctcctcagaaccttgccaagttgttaggagaaactgatgaccaacaagggtct
gttagagtgtcaaactcaagaaaattaaccagtaaccaatcgagattctcttttgcaaga
gaagaaccaaccaccaatgcatcagctgattatcaaccatctctaaattacattgagcaa
aattttaatcattatcatcatggtcatgattttcctaatagaagaaattatcaactggat
aatattggtactcgtaatggtttttccatggccaataatgaggaaacagttggttttggc
aacagcttttctcatctctcttctaataagctatcagtggccagacctcagatgtcagca
cctccagggttctcagcaccaaacagagcaccacccccgggttttacttctcattatgag
agaatggaacagaattttgactctttccatgcgagtcacttgcgtgatacctcctcattg
cacaatatacaccaggctccacaagttggacatgtgactaatggagacattgagtttatg
gatcctgctattctggcagttggtaaagggtttcctaatggccttcatctctcaagcttg
gacatgtcttcaagttgtcctccacaatcaaatacttttcaaaatgagggaacgcttcaa
ttactgatgcaaagatctctaactgcacatcagaaccagagttttgctgatacgagggac
atgttttctccatttggtgatgcttatggaatttcttccaggggtgtggagcaaactctg
accaacaatcaacccccatttgatggaatttcttccagggttctggagcaaactctggct
aacaatcaacccctatttgatgggatttcttccagggttctggagcaaactctggccaac
catcaatctccatttttacagctcagtcttccccagagtaggaactctgtcatgtcaaat
ggccactgggacagctggaatggggttcagagtggaaacagtttgggtgtagcagaactc
ctccgaacagaaaatttgggctttaacaagttctttacaggatatgaggaatcaaagatt
catatgtccaattctggcaatttgtataatagaacattcgggttgtaa
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