KEGG   Solanum dulcamara (climbing nightshade): 129901727
Entry
129901727         CDS       T09577                                 
Name
(RefSeq) uncharacterized protein LOC129901727 isoform X1
  KO
K19026  spatacsin
Organism
sdul  Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:sdul00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sdul03400]
    129901727
DNA repair and recombination proteins [BR:sdul03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Other HR factors
     129901727
SSDB
Motif
Pfam: Spatacsin_C
Other DBs
NCBI-GeneID: 129901727
NCBI-ProteinID: XP_055832960
LinkDB
Position
1:11042113..11091614
AA seq 3208 aa
MDFAYGGEDPAILQLQKWGSSRVQANLSDFCEGFISPRRELLLLLSYHCEALLLPLGKSI
KDPQSYKNLQNHDALFSCSLECKLPGKTELGNDCESTSQFIEMEMCNIKTKAVDFTESIS
FPSISDVSTVAWGRCEDLCSQHDNVPFKELLFVLGSEGVTVHAFCQSYMMSELITPTEQD
DVGQGLWVEWGPSTASAQLSGTVCDSTMQSNDSLDVSDMSWSSVTGGRANSCSMESQKEA
SSESFGVKRWFRTYLTKVETMKSDGTVYTKFPDKSSVPSSASVVSFNNFLSCPQLLEFLS
DGCPISHDKQNGNISAEDHADSISTDSIQMSPDALVGQMSSSYKCFRVFSNDAQCLIGFA
LNTKKDVQIESTNIDDGTSCKVLVAVARLINWGMQWVCSVTVGKCLEGRSAIEWPEFRFS
HAFLICLHFSGLVSIYIALTGEHIASLDLLNICEVSPSLVSQEQKNSSSKIRESCIEEKK
CGQLINQAGDFVGRRRFKRLLVISHSLKFCVIDEYGLTYVIHVDDHIPKKYCSLEKLHPQ
QLSDGMLVAWEAGAAEIGYQRVFSNFFGGKEQRKSSIIRESSFVDNTHEERKYGSYGSSL
SDALDVNKNRIFGSRLRSCHSRKVFLAIDESKEDDVVCFSPFGITRLVKGKCSWENGKCR
LVHSSSNVNMTINDDSSYNIQGWDAIVDEAIGCSFQGCLYLVTKDGISVVLPHLSLPSNF
YPVEAIGYRQSCYSAGSKYGVHKLHEFESTKRPFSPWKVEVLDKALLYEGPEVADALCLE
NGWDLSIIWIRNLQLALEYLKFEEIEKSLQMLAHVNLAEEGILRMLLAVVYLMSCKVGND
NEVSAASRLLALGTGFATKMIREYGLLQHKKDGMESWKAGGVQNSFFSSEVMDSRPGWTG
DLERLRKMAHFLEIIRNLQWQLTYKCKRLGQELVDQGEPVGETDLSQDESRILDLPADIL
SLEASNQKGLISASEMERNNGEDLALMPVDAFDCKDISSLDTFKEPYLISEEKRVFSIEN
PKDMIARWEIDNLDVKTVVKDAILSGRLPLAVLKLHLHRSRDLMSDQENQDTFNEVREVG
RAIAYDLFLKGETGLAVATLQRLGEDIETSLKQLVFGTVRRSLRMQIVEVMKGLGYLGPH
EWQILERISLIERVYPCSSFWSTFSCRHKEFKGVSNGNATEEIKLHLLAPLGRDLVIACG
ELDGVVLGSWMNVNEQPIAPETDNDSTHSSYWSAAALWFDVWDQRVVDCIVLDQPSLMGV
NVLWESQLDYHIRHSDWLDVSRLLEAIPSYALTSESLSVSLDVVCSSSVDEYLQKPHDSG
SYIYSLEEVDAVCMNVPSVQIFRFSAHSMCSMWLLMLMERELAKKFIFLKDYWGSTADIV
ALLAQSGFIRDVHKSLLPAEPAESWSKSVLAISDARTHPDSIQAFHKVIVHYCSQHNLLN
FLDLYLDHHKLALDPESVSWMQDATGDNQCAKWLLLQRVKGKEYEASFSNARAVVSHNLV
AGNSFSTMEIDDIIRTVDDIAEGAGEMAALATLMYAPIPIQDCLSSGSVNRLYSSVQCTL
ENLRPFLQRFPTLWRALTAACFGQDPTCSSIGPKPKLFGYSDLLDYLNWRESVFFSSAHD
TSLSQMLPCWFPKAVRRLIQLYVQGPLGWQSIADLPVDDPSLLRDIVPSDISPLSWEVAI
QKHIEEELYDSSLKESRVGIEHHLHRGRALAAFNQLLSNRVQNLKSESSRRQHGTPVQGQ
TNIQSDVQMLLSPITQSEQLFLSSVVPLAIVHFADSVLVASCALLLELCGLSPGTLQIDV
AALRRIASFNKSGPCSNHLQQLSPRGSSFHSNNSDNNITESLARGLADDYCQNDWFNQAI
QKSDQFTTSDRQPSRALMLVLQHLETSSLPSSADGVTCGSWLLTGNGDGVELRSQQKTAS
ENWNLVTTFCQAHQLPVSTRYLALLARDNDWVGFLSEAQIGGYTLEAVMEVASKEFGDAR
LKTHILTILKSSQSRKKFSSSSSSDTGEKKNGTSFPDENVYAPAELFGIIAECERQARPG
EALLLQAKNLCWSLLAAIASCFPDVSPLSCLTVWLEITAARETSAIKVNNAASQTANNVA
AAVEATNSLPASAKAPTVHYNRKNPKRRRLIEPVSVHSLVFTIPDVRKADGNVRIEDMIA
GEECEKQVDQDEKVSNDSGEVTGSLSRMVAVLCEQHLFLPLLRAFEMFLPSCSLLPFIRA
LQAFSQMRLSEASAHLGSFSARIKEEPHVYTQAGNEGKIGSLWISSTAVKAANAMLSRCP
SPYEKRCLLHLLTATDFGDGGSAATCYQRLYFKVNLAEPSLRKNDGLHLGNEPLDDASLL
TALEEHGHWEQARNWAKHLEASGGSWKSATHHVTETQAESMVAEWKEFLWDVPEERAALW
GHCQTLFLRYSFPPLQAGLFFLKHAEAAEKDLPARELHELLLLSLQWLSGMITQCSPVCP
LHLLREIETRAWLLAVESETQVKSEGELTLSSREPASGKGPNIIDRTASIITKMDNHINS
VRIKSGERNDTRESNQSHLKTTQMSDSSSGTILGSAKVKRRSKGFVSSRKSLADPVDRSN
EPETGSINFNVKEDSQVPDENLKIEATFSKWEERVGPAELERAVLSLLEFGQIAASRQLQ
HKLSPGCIPSEFKLVDAALKLAAIATPNNKASILVLDGELRSVMQSYHLFPNQHVIDPLQ
VLESFALLLTEGRGRGLCRRIISVVKAANVLGLAFSEAFEKPPNELLQLLSLKAQDSFEE
AKLLVQSHCMSAASIAQILAESFLKGLLAAHRGGYMESQKEEGPAPLLWRFSDFLKWAGL
CPSEPEVGHALLRLVATCQGIPHACEVELLILSHHFYKSSACLDGVDVLVDLAFKKVEAY
VSEGDFSCLARLITGVGNFHALNFILGILIENGQLDLLLQKFSAAVDANDADEEVRGFRL
AVLTLLKQFNPNDLDAFALVYSHFDMKHEAASLLESRAQQSCKEWSLRSDKDQTDELLAS
MRYFIEAAEVYSSIDAGNKTRQSCAQALLLYLQIRMPDLHFIFLSETNARRALVEQSRFQ
EALIVAEAYGLNQPGEWALVLWNQMLRPELVEQFVAEFVAVLPLQPSMLLELARFYRAEV
AARGDQSQFSVWLTGGGLPAEWAKYLGRSFRCLLRRTRDLRLRYQLATIATGFTDVIDAC
NKAFDKIPDSAGPLVLRKGHGGGYLPLM
NT seq 9627 nt   +upstreamnt  +downstreamnt
atggattttgcctatggtggtgaagatcctgcaatactgcaactgcagaaatgggggtcc
tcgcgagtccaagccaacctgtcagacttttgtgaaggttttatttctccaagacgggag
ttattgttgctactttcatatcattgtgaagctttgctacttccattgggtaaaagtatt
aaggatccacaaagctataagaatctccagaatcatgatgctttgttttcctgttcactg
gagtgcaagttacctggtaaaacagagttggggaatgattgtgagagcacttcacagttc
attgagatggagatgtgtaacataaaaacaaaggcagttgattttactgaatctatctct
ttcccctctatttctgatgtaagcacagtggcttggggtaggtgtgaagatttatgtagt
cagcatgacaatgttcctttcaaagaactgctttttgtgttaggcagtgagggggtaact
gtccatgctttttgtcaatcctatatgatgagcgagttaataacacccacagaacaagat
gatgtaggtcaagggttatgggtggagtgggggccgtcaacagcttcagctcaactatcg
ggaaccgtgtgtgactccaccatgcagtccaatgactctctggatgtcagtgacatgagt
tggtctagtgtaactgggggaagagcgaatagttgttctatggagagtcaaaaggaggcg
tcatctgagagttttggagtgaagagatggtttcgtacttatttgactaaagttgaaaca
atgaagtctgatggaacagtgtatacaaagttcccagataaatcatcagttccttcatct
gcttcagttgtttcatttaataattttctcagttgtccgcagctattggaatttctatct
gatggttgtcctatatcacatgacaaacagaatggtaatatctcagccgaagatcatgca
gacagtatatctacagattccatacagatgtctcctgatgctctagttggtcagatgagc
agttcttacaaatgtttcagagtgttctctaatgatgcgcaatgcttgattgggtttgcc
ttgaatacaaagaaagatgttcaaattgaaagcacaaatatagatgatggaacaagctgt
aaagttttagttgcagtggccaggttaattaattggggaatgcagtgggtttgctcggtg
acagtgggcaaatgcctcgagggcaggtcagcaattgagtggccagagtttagattttct
catgcttttcttatttgtcttcatttttctggcttagtctccatttacattgcattaacc
ggtgaacatatagcatctttagatctgttaaatatttgtgaagtttctccttctttagta
tctcaagaacaaaagaattcatcttcaaagatcagagaaagttgtattgaagagaagaaa
tgtggtcagctcatcaatcaagcgggagattttgttggtagaagaaggttcaaacggctt
cttgtcatttcccattccttaaaattttgtgtgatcgatgaatatggtttaacgtatgta
atacatgtggatgaccatatcccaaagaagtattgttcacttgagaaattacaccctcaa
caattgagtgatggaatgttggttgcttgggaggcaggtgcagctgaaattggctatcaa
agggtcttttccaatttttttggtgggaaggaacaaagaaaatcatccattattagagag
tcttctttcgttgataatacacacgaggaaaggaagtatggctcatatggaagtagccta
tctgatgctcttgatgtaaataagaataggatttttggtagtagattacggtcatgccat
agtagaaaagtttttcttgctatagatgaatctaaagaagatgacgttgtttgtttttct
ccttttgggatcactcggctagtgaagggaaaatgttcttgggaaaatgggaagtgtcga
cttgttcattccagttcaaatgtgaacatgacaataaatgatgacagcagctataacatc
caaggttgggatgccatagtggacgaagctataggttgtagttttcagggttgtttgtat
ttggtcacaaaggacggtatttctgtagttctgcctcatctttctcttccttcaaatttc
tatccggtcgaagcaattggataccggcaatcttgttatagtgctggttcaaagtatgga
gtccataagcttcatgagtttgaaagcacaaaaagacctttttctccatggaaagtggag
gtgttggataaagctctcttgtatgaagggcctgaagtggcagatgcattatgcttagaa
aatggatgggacttgagtattatatggattcggaacttgcagctggcactggaataccta
aaattcgaggagattgaaaagtctttacaaatgcttgctcatgtcaatttggctgaagaa
ggcatcttgaggatgctccttgctgttgtttatctgatgtcctgcaaagttggtaatgat
aacgaggtctctgctgcatcaaggcttcttgctttaggaactggctttgccaccaagatg
atacgagaatatggtttactgcagcataagaaagatggcatggagtcgtggaaagctgga
ggtgtgcaaaattcttttttttcttcagaggtgatggatagtagacctggctggacagga
gatctggaaaggcttcggaagatggctcactttctggagatcatacggaatctgcagtgg
caactcacatacaaatgcaaaaggctaggccaagaattggtggatcaaggtgaacccgta
ggtgagacagatttgtcacaggatgagtccaggattctcgatcttcctgctgatatctta
tctttggaggcttcaaaccaaaaaggtctgatttctgcttctgagatggagagaaataat
ggcgaagaccttgctttgatgcctgtggatgcatttgattgcaaagacatttcttcgttg
gacacttttaaggaaccatatttaatatctgaagaaaaaagagttttttctatagaaaat
ccaaaggatatgattgcacggtgggaaatagataatctggatgtcaaaacagttgtcaaa
gacgctatactttctggtcgtcttcctttggccgttcttaagctgcatcttcatcgttca
agagatttgatgtcagatcaggaaaatcaggatacattcaacgaagttcgtgaagttgga
agagctattgcttatgacttgtttctgaagggtgagactggacttgctgtagcaacactt
caaaggctgggggaagatattgaaaccagccttaaacagttagttttcggtactgtccgg
agatctctacggatgcaaattgttgaagtcatgaaaggacttgggtatcttggtccacat
gagtggcaaattttggagaggatctcactgattgagagggtttatccttgcagcagtttc
tggagtaccttctcttgccggcacaaagagttcaagggagtatcaaatggaaatgcaaca
gaagaaattaaactgcacttattggctccgttaggtagagacctagttattgcctgtggt
gaacttgatggagttgtgttgggttcatggatgaatgtgaacgaacaaccaattgctcct
gaaactgacaatgatagtactcattctagttactggagtgctgccgccttgtggtttgat
gtctgggatcagagagttgttgattgtatagtgctggatcaaccttcccttatgggggtc
aacgttttgtgggagtcacaacttgattaccacattcgccatagtgactggttggatgta
tcaagactcttagaggcaatcccatcatatgcattaaccagtgaaagcctcagtgtcagt
ttggatgttgtatgctcttcatcagttgacgaatatcttcagaaacctcatgactctggc
agttacatatattctcttgaagaggtggatgctgtttgcatgaatgtaccgagtgtccaa
atattcaggttttctgctcacagcatgtgctccatgtggttgctaatgcttatggagcgg
gaacttgctaagaaatttatttttctgaaggattactggggatctactgcagatattgtg
gcgcttcttgcccagtcaggttttattcgtgatgtgcataaatctttactgccggctgag
ccagctgagagctggtcaaaatctgtactagctattagtgatgccagaactcatccagat
tccatccaagcatttcataaggttattgttcactactgctcacagcacaacttgctgaat
ttcctggatctttaccttgaccaccacaaattggctttagatcctgaatcagtttcctgg
atgcaggatgcaacaggagataaccaatgcgccaagtggttgctcttgcaaagggtcaag
gggaaagagtatgaagcgtcattctctaatgcccgtgctgttgtatcacataatttagtt
gctggtaacagtttcagcaccatggagatagacgatataatacgtactgttgatgacatc
gcggaaggagcaggagaaatggcagctttggccacattgatgtatgccccaattccaatt
caagattgcttgagcagtggtagcgtgaacaggctctatagttctgtacagtgtacattg
gagaatcttaggccgtttctccagcgctttcctactttgtggcgtgcactaactgcagca
tgttttggacaagatccaacttgcagcagtataggtcctaaaccgaaattgtttggttat
tctgatttattagactatttgaattggcgtgagagtgtattcttctcttcagcacatgat
acttcactctcacagatgcttccatgctggttccccaaggctgtccggagattaatacag
ctttacgtgcagggcccacttggttggcaatcaattgcagatttgccagtggatgatccc
tctctgctgagggacattgttccttctgacatcagtcccttgtcctgggaagttgccatc
cagaaacacattgaggaggagctgtatgattcttcattaaaggaatctagagttggaatt
gagcaccatttacatcgtggacgtgcattggcagcttttaatcagctgctgtcaaataga
gttcaaaacttgaagtcagaaagttcacgtagacagcatgggactccagtgcaaggacaa
acaaacatccagtcagacgttcagatgcttctttcacctattacacagagcgaacagttg
tttctttcatccgttgtgccccttgctattgtgcattttgctgattcagtgttggtggca
tcgtgtgctcttctattggagttgtgtggtctatctcctggtacactccaaattgatgtt
gcggctttgagaagaatagcttcctttaataaatctggcccttgttccaatcaccttcag
caactttcccccagggggtcttcatttcattcaaataatagtgacaataatattaccgaa
tctctagcacgaggattggcagatgattattgccagaatgattggttcaatcaagctatt
caaaaaagtgatcagttcacaacctctgacagacagccatctcgagctctcatgcttgtc
ctgcaacatttggaaacatcaagtcttccgtcttcagctgatggagtgacgtgtggctct
tggttgttaactggtaacggtgatggagttgaactgaggtctcagcaaaaaactgctagc
gaaaactggaatttggtgacaacattttgtcaggcgcatcaacttcctgtgagcactaga
tatcttgctttattagcaagagacaatgactgggttggttttctctcagaagctcaaatt
ggaggctacaccttggaggcagtcatggaagtagcatcaaaggagtttggtgatgcacgt
ctgaaaacccacatactaacaattttgaagagttcacaatcaaggaagaaatttagctct
tcttcaagttcagatactggggaaaagaagaatgggacatcatttccagatgaaaatgtg
tatgcaccggccgaactatttggaattatcgctgaatgcgagaggcaagcaaggcctgga
gaagctcttctcctgcaagcaaagaatttatgctggtcacttttggctgcaattgcttct
tgttttccagacgtctctccgttgtcttgcctgacagtttggctagaaataactgcagca
agggaaacatcagccatcaaagttaataatgctgcttcccagactgcaaacaatgtcgcg
gctgctgtggaagccacaaattctctacctgcatctgccaaagcacctacagttcattat
aatcgcaaaaacccaaagcgtaggcggctcattgagcctgtgtcagtgcattccttagtt
ttcacaatccctgatgtacggaaggcagatggaaatgtgagaattgaagacatgattgct
ggagaggaatgtgaaaagcaagttgatcaggacgagaaagtttcaaatgactctggtgaa
gtgactggttctttgtctagaatggttgccgtgctttgtgaacaacatttattccttcct
ctgctcagggcttttgaaatgtttcttccttcatgctcgctcttaccttttatccgagct
cttcaggcattttctcaaatgcgcctctctgaagcatcagctcatctgggatccttttct
gctagaattaaggaagaacctcatgtatacacacaagctggaaacgaagggaaaattgga
agtttatggataagttctactgctgtgaaagctgctaatgcgatgctctcaagatgtcct
tcaccttatgaaaaaagatgcttattacacctcctcactgccactgatttcggtgatgga
ggttctgctgcaacatgttatcaacgactctacttcaaagtaaatttggcagaaccttct
cttcgcaaaaatgatggcctacatcttggaaacgagccactagatgatgcttcactttta
acagctttagaggaacatggacactgggaacaggcacgcaattgggctaagcatttagag
gccagtggtgggtcttggaaatctgcaacacaccatgttactgaaacacaggctgagtcc
atggttgcagagtggaaggagtttctttgggatgttccggaagaaagggctgctttatgg
ggtcactgccagactctctttcttagatattcctttccaccattgcaggcgggattattt
ttccttaagcatgctgaggcagcggagaaagatctcccagccagagagcttcatgaacta
ttgttgctttctctacaatggttgagtgggatgattactcaatgcagtccagtttgtccc
ctgcatcttttgagagaaattgaaactagagcatggctattggctgttgaatcagagact
caagtgaaaagcgagggagagcttaccctttctagtcgtgaacctgcaagtggcaagggg
cctaacattattgaccgaactgcaagcattattactaaaatggataaccacattaattca
gtgagaatcaaatctggtgagaggaatgatacaagggaaagtaaccaatcacatctcaag
accactcagatgtcagattctagctcaggtaccattttgggcagtgcaaaagttaaaagg
agatccaaaggctttgtatcatcaagaaagtctttagctgatccagtggacagaagtaat
gagcctgaaactggctccattaattttaatgtgaaggaggattcacaggtacctgatgaa
aaccttaaaatagaagcaactttctcaaagtgggaggaaagagttggacctgcagagcta
gaacgggctgtcctttcacttctggaatttggacaaattgcggcttcccgacagcttcaa
cataaattatctccaggttgcataccatctgaatttaaacttgtggatgctgccctaaag
cttgctgcaattgccaccccaaacaacaaagcatcgatattggtgctcgatggtgaactt
cgttctgttatgcagtcataccatcttttccctaatcaacacgtgattgatcctctccag
gtactggaaagttttgcattactcttaactgaaggtaggggacgtggcctttgcaggcga
ataatatcagttgtgaaggcagcaaatgtgttgggtcttgcattttcagaagcatttgaa
aagcctcctaatgaactcttacaattgctttctctaaaagcacaagattcttttgaagaa
gcaaagctcttagttcaatcacattgtatgtctgcagctagtattgctcaaattcttgct
gaatcatttttgaagggtttgctagcagcacatcgtggaggttacatggaatctcaaaaa
gaggagggacctgctcctttattgtggagattttctgatttcttaaagtgggctgggctt
tgcccctctgaaccagaagttggccatgctttactgcgtttagttgccacttgtcaagga
ataccacatgcctgtgaagttgagcttcttattttgtcgcaccacttctacaagtcctca
gcatgtctcgatggagttgatgttcttgtagatcttgcattcaaaaaggtggaggcttat
gtatctgagggtgatttttcatgtttagctcgcttgataaccggagtggggaacttccat
gcacttaattttattcttggtatccttattgaaaatggtcagctcgatcttcttcttcag
aagttttcagctgctgtcgatgccaacgatgctgacgaggaagtaagaggattcagattg
gctgttctcacattactcaagcaatttaatcccaatgatctcgatgcatttgccttggtt
tatagccattttgatatgaagcatgaggctgcttctcttttggagtcacgagcacagcaa
tcatgtaaggagtggtccctccgttctgacaaggatcaaactgatgagctcttggcttcc
atgcgatacttcattgaagctgctgaagtttactcttcaattgatgctgggaacaaaaca
cgccaaagttgtgcacaggcattacttctctaccttcagattcggatgccagacttacac
tttatctttctgtctgaaactaatgcacggagggcattggtcgaacaatcccgcttccaa
gaagcactaattgttgctgaagcttatggccttaaccagccaggtgaatgggctctagta
ctttggaatcaaatgctaagaccagagcttgtcgaacagtttgtggctgaatttgttgct
gtgctaccccttcaaccctcaatgcttcttgaacttgccagattttacagggctgaagtg
gctgcaagaggggatcagtcacaattttctgtgtggctgactgggggagggctcccggct
gaatgggcaaaatatctcgggagatcattcagatgtttgttgagaaggactagggacttg
aggttgcgataccaactggctaccatcgcaacaggatttaccgatgtgattgacgcgtgc
aataaagcattcgataaaatccctgacagtgctgggcctcttgtcctgagaaaaggtcat
ggaggaggttaccttccactgatgtaa

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