Solanum dulcamara (climbing nightshade): 129902144
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Entry
129902144 CDS
T09577
Name
(RefSeq) 5'-3' exoribonuclease 3 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03008
Ribosome biogenesis in eukaryotes
sdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
129902144
09123 Folding, sorting and degradation
03018 RNA degradation
129902144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdul03021
]
129902144
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129902144
03009 Ribosome biogenesis [BR:
sdul03009
]
129902144
03016 Transfer RNA biogenesis [BR:
sdul03016
]
129902144
Transcription machinery [BR:
sdul03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129902144
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
129902144
Ribosome biogenesis [BR:
sdul03009
]
Eukaryotic type
Pre-60S particles
RNases
129902144
Transfer RNA biogenesis [BR:
sdul03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
129902144
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
129902144
NCBI-ProteinID:
XP_055833180
LinkDB
All DBs
Position
9:complement(1583999..1597325)
Genome browser
AA seq
1081 aa
AA seq
DB search
MGVPAFYRWLAEKYPMVVVDVVEEEAVVIEDVRIPVDTSKPNPNNIEYDNLYLDMNGIIH
PCFHPEDRPSPTTFEEVFECMFDYIDRLFSMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
SAKDAADAAAEEEKLREEFEREGRKLPPKQESQVFDSNVITPGTQFMATLSIALQYYIHL
RLNHDSGWKNVKVILSDANVPGEGEHKIMSYLRLQRNLPGYDPNTRHCLYGLDADLIMLA
LATHEVHFSILREVVFTPGQQDKCFLCGQMGHLAADCEGKAKRKAGEFDEKGNAEIVAKK
PFQFLNIWTLREYLEFDMRIPNPPFEIDFERIIDDFIFICFFVGNDFLPHMPTLEIREGA
INLLLAVYKKEFRSMEGYLTDGSQPNLSRVEHFIQAVGSYEDKIFQKRARLHQRQSERIK
REKAQLKRGDDSAPRTEPESLVPVARFGGSRLASGPSPSPYQQGGTARRDQLQHGTSSLS
VLDIPIEHYGTVEDTGSIFRNKKASRLSSGATIGAAIVEAENSLDTEVLENKEELKTKLN
KLIREKNDVFNSENPEEDKIKLGVPGWKERYYEEKFSAKTPEEMEEVRKDIVLKYTEGLC
WVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGELNITFELGSPFKPFNQLLGVFPAASSH
ALPEQYRLLMTDPKSPIVDFYPSDFEVDMNGKRFSWQGIAKLPFIDEARLLAEVAKVEHT
LTEEEARRNSVMNDMLFVSLSHPLSPYIFSLDDRCKQLTDNERVEVKERLDPKASGGMSG
YISLCMGDPCPPIFRAPIDGLEDIMDNQVICAIYRLPDAHKHITRPPKGVIFPKKLVTFG
DIKPDPVLWHEDSGRKPWENGRNHHPGGNSGRHLGEAAHRLVSNSLQMRSGHGDDTHAQP
VPYPYGPFPSSQRYNGQGHVRPTFGYSARDDTAAPYQYDQSYHQAYIPAAVDPYSWPPPL
YERGSQPVPPRSDYHRHGHHAAVTQQNVGYSYPSHAYHPQHISQSPVPPIDHFHQQSGYS
SYPSYHEPYEPGIYNQQGGGWTPQVNQNVAQGYFNPRPSDNRFSALGRGRDRQPPSSGHH
R
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccggcattttaccgatggttagctgagaagtatccgatggttgtggtggat
gttgtagaagaagaggccgttgttatcgaagatgtgagaattccggtggatacgagcaaa
cctaatcccaacaacatcgagtatgataatttgtatctggatatgaatggtatcattcat
ccatgttttcacccagaagatagaccctctcctacgacatttgaggaggtctttgagtgc
atgtttgattacatagacaggcttttctctatggtgcgtcctcgaaagctgctatatatg
gctattgatggtgttgcaccaagggcaaaaatgaatcagcagagatctagacgttttaga
tcagcaaaagatgcagcagatgcggcagctgaggaggaaaagctgcgggaggaattcgag
agagagggcaggaaactccccccaaagcaagaatcacaagtttttgattcaaatgtcatc
actcccgggactcagttcatggccacattgtcaatcgcacttcagtactatattcatctt
agactaaaccatgattcaggatggaaaaatgtcaaggttatactttctgatgcaaatgtt
cctggtgaaggggagcataaaattatgtcctaccttcgactccaaagaaatcttcctggt
tatgacccaaatacacgtcattgtctctatggtttggacgcagatctaatcatgttggct
ttggctactcatgaagttcacttctctatactcagagaggttgtatttacgccaggtcag
caggataagtgtttcctttgtggtcaaatgggtcacttagctgcagattgtgaaggaaag
gcgaaacgaaaagcaggagaatttgatgagaaaggcaatgctgagattgtggcaaaaaaa
ccttttcagttcctcaacatatggactctgcgggagtatttagaatttgatatgagaatc
ccaaatcctccttttgagattgatttcgagcggatcattgacgacttcatatttatttgt
ttctttgttggaaatgattttctcccacatatgcctactcttgagatccgcgagggtgca
ataaacttgttactggctgtctataagaaggagtttagatccatggaaggttatttaact
gatggtagccagccaaatcttagcagggtagaacatttcattcaggccgtgggatcatat
gaagataagatatttcagaaaagagcccgcttacatcagagacaatctgagagaattaag
cgtgaaaaggcccagttaaaaagaggagatgactctgctcctcgaactgaacctgaatct
ttggttccagttgctcggttcggtggttctcggcttgcttcaggtccttcgccttctccc
tatcaacaagggggaactgcaagacgtgaccaacttcagcatggcacatcaagtctttcc
gtccttgacattccgatcgagcactatggtactgttgaagatacaggatctatttttcgc
aacaaaaaagcttcacgtttgagttctggggccacaataggagctgcaattgttgaagct
gagaatagccttgacactgaagtattagaaaacaaagaagaactgaaaacaaagctaaac
aagttaatccgtgagaagaatgatgtttttaattcagagaaccctgaggaagacaagatc
aaactgggagtgccaggatggaaagaaaggtattatgaggaaaaattttctgcaaagaca
cctgaggagatggaagaagtacgaaaggacattgtcttgaaatacacagaagggttgtgc
tgggttatgcactattattatgaaggtgtttgttcctggcagtggttttatccatatcat
tatgccccttttgcttcagacctcaaggatcttggggagttgaatatcacctttgaacta
ggttctccattcaaaccattcaatcagctcttgggagtttttcctgctgccagttcacat
gctcttcctgaacagtataggctattgatgacagacccaaagtcgcccattgtcgacttc
tatccttctgattttgaggtggacatgaatgggaagcgcttttcatggcagggcattgcc
aaactacctttcattgatgaagcccggctccttgcagaggttgcaaaagttgaacatacc
ttgacggaggaagaagcacgaagaaatagtgtgatgaatgatatgctttttgtgtcatta
tctcaccctctgtctccatacattttttctcttgatgatcgttgtaagcagcttacagat
aatgaacgtgttgaagtgaaggaacgcttggacccaaaagcaagtggtggcatgagtgga
tacatatccctttgcatgggagatccttgtcctccaatttttagagctcctattgatggg
ttggaagatattatggacaatcaagtcatatgtgcaatatacagactcccagatgcccat
aagcacatcacacgaccacctaaaggggttattttcccgaagaagttggtcacattcggt
gatataaaacctgatccggtgttgtggcatgaggattctgggaggaaaccttgggaaaat
ggaaggaaccaccaccctggcggaaactctggtcgtcaccttggagaggcagcacacagg
ctggtttctaatagtttgcagatgaggagtggtcatggtgatgacacacatgctcaacca
gtaccatatccttatggtccttttccttcctctcaaagatacaatggtcagggacatgtt
cgccctacttttggctattctgctcgagatgacacagctgcgccgtatcagtatgatcag
agttaccaccaggcttatatcccagctgctgttgatccttatagttggcctcctcctctg
tatgagaggggtagccaacctgtccctcctagaagtgattatcatagacatggacatcat
gccgctgtgacgcagcaaaatgttggatatagttatccttctcatgcctatcatccgcag
catattagtcaatcaccagtaccaccaattgatcattttcaccagcaaagtggatacagt
agttaccccagttatcatgaaccttatgagccgggaatctataaccaacagggtggtgga
tggacccctcaagtaaaccaaaatgttgctcagggttatttcaatccacgtccctccgat
aatcgcttctcggctttaggaagaggaagagataggcagccaccatcttcaggccatcac
cgttag
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integrated database retrieval system
