Solanum dulcamara (climbing nightshade): 129902253
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Entry
129902253 CDS
T09577
Name
(RefSeq) zinc finger CCCH domain-containing protein 24
KO
K15332
tRNA (uracil-5-)-methyltransferase [EC:2.1.1.-]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sdul03016
]
129902253
Transfer RNA biogenesis [BR:
sdul03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
129902253
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
zf-CCCH
Methyltransf_15
Ubie_methyltran
MTS
Methyltransf_4
RRM_1
Methyltransf_11
PCMT
Ish1
PrmA
Cons_hypoth95
AviRa
Torus
Motif
Other DBs
NCBI-GeneID:
129902253
NCBI-ProteinID:
XP_055833376
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All DBs
Position
9:complement(74541731..74552538)
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AA seq
946 aa
AA seq
DB search
MSTEIVNPELNGEDSSEKLHSPEIVKSELNGDDSSENFQLPETMNAELNGKDTSEKVHSP
EILKPELNGDDSSEKLHLPEALNPEFNGHDSSEQLHLPETTAEPTEKTLPTEKRKREDSE
TETGQKQQNPLWKTTLCSYFRRNDDSCSHGEYCRYAHGESELRVRPDNTWDPTSERAKKM
VKKAADDDREVVEDKEEKCNDVMMTDALDDDECASSGSGLSKCLVNLPMKWSSDNLRCFL
KEHGVTFKSAKKKKGMAVGFATFENAEQVKNAVKELDGKPAGNRILNVGDIIPRAFERKG
NSAMSSFLTNQQDEKKTQAGDCLDLTKISDETEAEDPVTSDSVLEGRCVRDVVTPLAKMP
YADQLEQKKSSLTRTLKTLTRNARKACPNGVPLPEWILKAREIGGLPCKLEGIIESPLIN
GYRNKCEFSAGYSVLGKTTVGFQLGNFREGVTAVEEAVDCPNVSEVACKYAAIFQDFLQQ
STLPIWNRLNNTGFWRQLTVREGRMPGKNVEVENPNADVSELMLIVQVSTLAFDDALVND
ELQDLAKAFAMGASSASPTLPLTALVVQDHTGISNVAPADAPLRVLPFPRGESYSELDAD
NAVAEAKIHDFINGLKFCISPTAFFQVNTLAAEKLYSLAGDWASLGPDTLLFDVCCGTGT
IGLTLANRVGMVVGIEMNASAVSDAQRNAEINGIKNCRFICGKAEKVMGSVLKEYLASPL
KVDGLLDIKEKKKQENTTSTEKTDSIVNASETDDESGIGSENGKSMCIDQDTTPIENMDS
TDSATEPEGKTGLECTNDKSLSESSVDGITESETQLKRSSSSENLTTPVQHFKNVVAIVD
PPRAGLHPTVIKLLRTNSRLRRLVYISCNPESLVANAIELCTPSPDETEKGNNRNNRLWR
KMSSATLARHRTKSMPSSEPFKPVKAMAVDIFPHTPHCELVMLLER
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacggaaattgtaaaccctgaattaaacggcgaggattcatcggagaagctccat
tcgccggaaattgtgaaatctgaattgaacggagatgactcatcggagaactttcagttg
ccggaaaccatgaatgctgaattgaacggcaaggatacatcagagaaggtccattcaccg
gaaatacttaaacctgaattgaacggagatgactcatcggagaagctccatttgccggaa
gctctgaaccctgaatttaacggccatgattcatcggagcagctccatttgccggaaacc
accgcggaaccgacggagaaaactcttccaacggagaagcgaaagcgagaagattcagaa
acagaaacagggcaaaaacaacaaaatccgttatggaagacgactctttgctcttatttt
cgaagaaatgatgattcatgcagccatggcgaatactgccgttacgcccatggtgagtcg
gagcttcgggtccgacccgataatacttgggacccgacttctgagagggcgaagaagatg
gttaagaaggccgccgatgacgacagggaggtggtagaggataaagaagagaagtgcaat
gacgtcatgatgacagatgcattagacgatgatgaatgtgcttcatccggttctgggctg
tcaaaatgcttggttaatcttccaatgaagtggagttcggataatttaaggtgttttctt
aaagaacatggtgttacttttaaatcagccaaaaagaagaaaggcatggctgtaggattt
gctacttttgaaaatgcagaacaagtgaagaatgctgtgaaggagttggatggaaagcct
gctggcaacaggattttaaatgttggagatattattccacgggcatttgagagaaaaggt
aattcggcaatgtcctcatttctgaccaatcaacaagatgaaaagaaaacccaagctgga
gattgtttggatttgactaaaatatcagatgagactgaggctgaggacccagtgaccagt
gattcagttctggagggtaggtgtgttcgggatgtggtgactcctcttgctaaaatgcca
tatgctgatcaactggagcagaagaagagctctttgacgcgaactctcaaaacacttact
cgaaatgcacgtaaagcttgcccgaatggtgttccacttccagaatggattctcaaagct
agggaaataggtggtcttccatgcaaactagagggcataattgaatcgccacttatcaat
ggatatcgaaacaagtgtgagttttctgcgggatactctgtactaggaaagacgactgtg
ggatttcagcttggaaatttcagggagggcgtgacagctgttgaggaagctgtggactgc
ccaaatgtttccgaagttgcctgtaaatatgctgctatctttcaagattttttacaacag
tcaaccctacctatttggaacagattgaataatactggattctggcgtcaacttaccgtt
cgagaaggtcgcatgcctggtaaaaatgtagaggttgaaaatcccaacgcagatgtttca
gagcttatgctgattgttcaggtttccactctggcttttgacgatgcattagttaatgat
gaacttcaagatttggccaaagcatttgctatgggcgcttctagtgcatcaccaacatta
cctcttactgccctggtagttcaggatcacactggtatatcaaatgtagcaccagcagat
gctcctctgcgtgtgctcccatttcccagaggggaaagctattctgaactggatgcagat
aatgcagttgctgaagcaaaaattcacgattttattaatggacttaagttttgtatttcg
cccacggccttctttcaggtgaacacccttgctgcagagaagttgtactcccttgcaggg
gactgggctagcttgggtcctgataccttgctttttgacgtttgctgtggaactggaaca
attggtcttactttggcaaatcgagttggtatggttgttggcattgaaatgaatgcttct
gctgtttctgatgctcaaagaaatgctgaaatcaatgggataaagaactgtagatttatt
tgtggaaaggcagaaaaagtcatgggatctgtgctgaaagagtatcttgcttcacctctg
aaagtagatggacttctagatataaaagaaaagaaaaaacaagaaaatactacttccaca
gagaagactgattctatagttaacgcatcggaaacagatgacgaatcaggtattgggtct
gaaaatggtaaaagcatgtgcattgatcaagatactacacctattgagaatatggattct
acggatagcgccacggaacctgaggggaaaacaggcctcgagtgtaccaatgataaaagc
ttgtcagaatcttcagtagatggcattacagaatcggaaacccaacttaagagaagttct
tcatcagagaatttgaccactccagtacaacatttcaagaatgttgttgcaattgtagat
cctccacgtgctggacttcatcccactgttatcaaacttttaaggactaattcacgtcta
aggaggcttgtttacatttcctgtaatcctgaaagcttggttgcaaatgctattgagctc
tgcacaccttctccagatgaaacggagaaggggaataatagaaataacagattatggagg
aagatgagtagcgctactcttgcacgacataggaccaaatctatgcccagttcagagcct
tttaaacctgtcaaagccatggctgttgatatttttccacatactcctcattgtgaactg
gtgatgcttctagagaggtaa
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