KEGG   Solanum dulcamara (climbing nightshade): 129903057
Entry
129903057         CDS       T09577                                 
Name
(RefSeq) E3 ubiquitin-protein ligase ATL23-like
  KO
K19037  E3 ubiquitin-protein ligase ATL23 [EC:2.3.2.27]
Organism
sdul  Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:sdul00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:sdul04121]
    129903057
Enzymes [BR:sdul01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     129903057
Ubiquitin system [BR:sdul04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   ATL proteins
    129903057
SSDB
Motif
Pfam: zf-RING_2 zf-RING_11 zf-C3HC4_2 zf-rbx1 zf-C3HC4 zf-RING_5 zf-C3HC4_3 zf-RING_UBOX zf-ANAPC11 zf-RING_16 Prok-RING_1 zinc_ribbon_16 zf_RING_Vps8_fungal zf-RING_Vps41 Prok-RING_4 SLX1_C zf-RING_4 zf-C3HC4_IRF-2BP1_2 zf-Di19 Baculo_IE-1 PHD PHD_NSD zf-RING-like RINGv DUF1272 zf-C3H2C3
Other DBs
NCBI-GeneID: 129903057
NCBI-ProteinID: XP_055834512
LinkDB
Position
9:complement(1140266..1141020)
AA seq 136 aa
MLVSVFLALFLPCVGMSVVFLVYICLLWYAAAYQSGGPGTENYHNDPVKTNQELGLSAAQ
LDKLPKITGKELVMGNDCAVCLDEIENEQFARVVPGCNHGFHLECADTWLSKNPICPVCR
TKLEPDFFNLTESNPC
NT seq 411 nt   +upstreamnt  +downstreamnt
atgcttgtctctgttttcctcgctttgtttcttccttgcgtcggaatgagcgttgttttc
ttagtctacatctgtttgctctggtatgctgccgcttaccagtccggcggtcctggcacc
gaaaattatcataacgacccggtgaagacgaatcaggaattgggtctttccgctgctcaa
ttagataaactcccgaaaattaccgggaaggaattggtaatgggtaatgattgtgcggtg
tgtttggatgaaattgaaaacgaacaatttgctcgtgttgttccgggttgtaaccatgga
tttcatcttgaatgtgctgatacttggctttcgaaaaatccaatttgtcctgtttgtaga
actaagctagagccggatttctttaatctgactgaaagtaacccatgttga

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