Entry |
|
Name |
(RefSeq) small RNA degrading nuclease 5
|
KO |
K14570 | RNA exonuclease [EC:3.1.-.-] |
|
Organism |
sdul Solanum dulcamara (climbing nightshade)
|
Pathway |
|
Brite |
KEGG Orthology (KO) [BR:sdul00001]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
129903059
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:sdul03009]
129903059
Ribosome biogenesis [BR:sdul03009]
Eukaryotic type
Pre-60S particles
RNases
129903059
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
9:15165988..15184373
|
AA seq |
571 aa
MSCEKRKAETPDEQKTSKDHKANSFFDVYGPEARADIVFNKPEANSTLNLQDVQGLVTWV
LADGFMPSWVFIKNKPLIPKVVMLYVPGLDASLYLSQSKVLKGFKECCGVPRPVLALSCV
SDGNQTIDALLTCKSKRKRKVADHISPKITQSSEQGAEAPNKETVSFADLKKDIPFPLSY
YTLSDKELEENGYCYEQQEFLSTLPAPSGTPPHEVLALDCEMCITREGFELTRVTLVDVE
GQVMLDKLVKPSNDIVDYNTRYSGITCQMLDDVTTTLIDIQEEFLKLVHKETILVGHSLE
NDLLALKISHNLVIDTAVLYKHPRGSYKAALRVLSRKFLGREIQHSDTGHDSVEDAKATL
ELALLKIKNGPDFGIPPSQQLLRRKLLSVLSDSGKVSSIIDNISIARRYAAELSHTIPVS
SDDEALSKAIKEVRNDKVQFIWTQFAELYAYLRKQADDSEELNKKLAEMIALLTCEKQSN
CRKSIKFDVTPELKDILGRMNRRVRNIYSNLPLNAMLIICTGHGNTAIVQRLRRILSEQT
DASMSRENIVKLLEELQAQAEVGLCFVGVKH |
NT seq |
1716 nt +upstreamnt +downstreamnt
atgagttgtgagaagaggaaagcagaaacccctgacgaacagaaaaccagcaaagaccat
aaagccaactccttctttgatgtttacggccctgaggcgagagcagatattgtttttaac
aaaccagaagccaactcaaccttgaatcttcaagacgtgcaagggcttgtcacctgggtt
cttgctgatgggttcatgccatcatgggtttttatcaaaaataagcctttgatccctaaa
gtggtaatgctgtatgtccctggccttgatgcatctctatatctatcacagtctaaagtg
ctcaaaggtttcaaagaatgctgtggtgttccgaggccagttttagctctcagttgtgta
tcagatggaaatcagacaatagatgcacttctcacgtgcaaatcaaagaggaaaaggaaa
gtagctgatcacatttcaccgaaaattacccagtcatctgaacaaggtgctgaggctccc
aataaggagactgtgtcctttgcagacctcaagaaggatataccatttccccttagttat
tacacactttcggacaaggaactagaagaaaatggatactgttatgagcaacaagaattt
ctttcaacgcttcctgctccttcaggaacacctccacatgaagttttggcccttgactgc
gagatgtgtattacaagggaaggctttgagcttaccagagtgacattagtggatgttgaa
ggacaggttatgctggataaattggtcaaaccatcaaatgacattgttgactacaatact
aggtatagtggaattacatgtcagatgttggatgatgtgactaccactctaatagatatc
caggaggagttcttgaaactggttcacaaggagaccattctggttgggcattccttggaa
aatgatttgttagccctgaagatcagtcataatttggtaattgataccgctgtgttgtat
aagcatccaagaggatcctacaaagctgctcttcgtgttttgagcagaaaatttctcggc
agggagatacagcactcagacactgggcatgatagcgttgaagatgcaaaagctacattg
gaactagcactactaaaaataaaaaatgggcctgattttggcatacctccatctcaacaa
ttattgcggcggaagcttctttcagttctgagtgactctggcaaagtatcctcaatcatt
gataatatatccatagcgaggagatatgctgctgaattgtcccatacaattccagtatca
tctgacgatgaagctctttcaaaagccattaaagaggtcagaaatgataaggtacagttt
atctggacgcaatttgcagagctatatgcatacttgaggaagcaagcagatgactctgag
gagctaaataaaaaattagcagaaatgatagcattgctgacgtgtgagaaacagtctaat
tgcagaaaaagcatcaaatttgatgtcactcctgaactgaaggatatattaggccgcatg
aatcgcagagtcaggaacatttactccaatcttcctctaaatgctatgcttattatttgc
actggtcatggaaacactgcaatagttcaaagattgaggaggattttgtcagagcagact
gatgcctcgatgtcccgtgagaacattgttaaactcttggaggagttgcaggcgcaagcc
gaagttggtttgtgctttgtaggtgtcaaacattga |