Solanum dulcamara (climbing nightshade): 129903235
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Entry
129903235 CDS
T09577
Name
(RefSeq) E3 ubiquitin-protein ligase RZF1-like isoform X1
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sdul04131
]
129903235
04121 Ubiquitin system [BR:
sdul04121
]
129903235
Enzymes [BR:
sdul01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129903235
Membrane trafficking [BR:
sdul04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
129903235
Ubiquitin system [BR:
sdul04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
129903235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4_2
Zn_ribbon_19
zf-RING_11
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-RING_5
zf-ANAPC11
zf-Nse
zf-RING_16
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
129903235
NCBI-ProteinID:
XP_055834714
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All DBs
Position
9:22540276..22541871
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AA seq
335 aa
AA seq
DB search
MSSRYQNPNNGNRNFQRYWCYQCHLIVRVSPSEIVCPRCFGHFLCEINEANPRQILDFTA
FDPSPEARIFEALTLMLDPNLFNNSQGNVVPIFRRSDGTETVEPPPDSLRTTGRHQRTRD
FWFRPRRRYSFLNNDTDEWTPESGILARPRSWIIIRPSGEHFLGGPNRLLAGERQLGPPE
DYFTGPGLENLIEELTQNDRPGPAPTPESIIGSIPTVVIAPAHLRDDSECPVCKEKFKVG
GAAKELPCKHIYHSDCIVPWLRLHNSCPVCRNPLPVSAEAPMDTSDDCLEEQEASNRQRR
CFRLRQMAASLWPFRSRYRPVRNHDEPSVASCNIL
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcaagatatcaaaaccctaataatgggaacagaaactttcagcgttactggtgt
tatcaatgccatctcatcgtcagggtgtcaccgtcggagatcgtctgtccccgttgtttc
ggtcacttcctttgcgaaatcaacgaggctaaccctagacaaatcttggacttcactgca
tttgatccttctccagaagctagaatttttgaagctctaactctcatgctcgatcctaat
ttgttcaacaactctcaaggcaatgtggtccctattttccgacgttcggacggaactgaa
actgtcgaaccaccacccgattctctcaggactacaggtagacatcagaggactcgagac
ttctggtttagaccgagaaggagatactcatttctaaacaacgacacggatgaatggaca
ccggagagcggaattctagctcgtccgcgttcatggattatcatccgaccatccggagaa
cattttctgggtggacctaaccgcctacttgcaggagaaagacaattaggtccacccgaa
gattattttacaggtccggggcttgaaaacctaatagaagagttgactcaaaatgatcgg
ccgggtcctgcaccaacacccgagtcgatcattggttctattccgacggtggtgattgcg
ccagcacatttaagagatgattcggaatgtccggtttgtaaggaaaagtttaaagtaggt
ggagcagcaaaagagttgccatgtaaacatatatatcattcagattgcattgtcccttgg
ttaaggcttcataattcttgcccggtttgccggaatccattaccggtttctgccgaagct
ccgatggatacttccgatgattgtcttgaagaacaagaagcaagcaatagacagcggcgt
tgcttcagacttagacaaatggcagcttctctttggccatttcgttcgaggtatcgtcct
gtgcgtaaccatgatgaaccatccgtggcgtcatgtaatattctttag
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