Solanum dulcamara (climbing nightshade): 129903313
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Entry
129903313 CDS
T09577
Name
(RefSeq) uncharacterized protein LOC129903313
KO
K07573
exosome complex component CSL4
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129903313
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129903313
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
129903313
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
129903313
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GFIT
Motif
Pfam:
EXOSC1
ECR1_N
ECR1_N_2
RRP4_S1
RRP40_S1
CHASE5
Motif
Other DBs
NCBI-GeneID:
129903313
NCBI-ProteinID:
XP_055834814
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All DBs
Position
1:25514214..25521729
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AA seq
197 aa
AA seq
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MRMTMEAELVTPGQILGKALQLKAGKGAYVSTENGTVYASVTGFRSLIPPASDFVDQRST
VEVTGHKAHGAVPQPGSIVFARVTKVMARTASADIVCVDSKSVREKFTGIIRQQDVRATE
IDKVDMHLSFRPGDIIRALVLSLGDARAYYLSTAKNELGVVSAESVAGGTMVPISWTEMQ
CPLTGQVEPRKVAKVEA
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atgaggatgacaatggaagctgagttggtgacgccaggacaaatattaggtaaagcctta
cagctcaaagccggaaagggggcttacgtttcaaccgagaatggcaccgtttacgcttct
gttaccggattccgttctcttataccaccggcttctgactttgttgaccagagatcgaca
gtcgaagttactggtcataaagcccatggagcagttcctcagcctggttccattgttttt
gctagggttactaaggtgatggctagaacagcttcggcagatatagtgtgtgttgattcc
aaatctgtgcgtgagaaattcaccggcattattaggcaacaagatgtcagagcaactgag
attgacaaagtcgacatgcatttgtccttccggccgggtgatattattcgtgcattggtg
ctatcacttggagatgcacgagcatattatctgtcaactgcaaaaaatgagctgggcgtg
gtatctgctgaaagtgtggctggcggtaccatggttccaatcagttggacagaaatgcag
tgccctctaactggtcaagtagaaccgagaaaggtggccaaagttgaagcttga
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