Solanum dulcamara (climbing nightshade): 129903461
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Entry
129903461 CDS
T09577
Name
(RefSeq) uncharacterized protein LOC129903461 isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
129903461
Enzymes [BR:
sdul01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
129903461
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
CarbopepD_reg_2
Motif
Other DBs
NCBI-GeneID:
129903461
NCBI-ProteinID:
XP_055834995
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Position
9:7046411..7052498
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AA seq
659 aa
AA seq
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MIVPKHSQISTPVLQLLQQEDQVVIDNGIFQLRLTNPGGKIIGIQYNGIENLLELNNPIL
NGGFWDLNWSVPGTSGTRGKFDEIECNSFKVITETEEQIELSFTRKWDPSLQGEQSPLTL
DIRFIILRDSPGFYSYAIYEHKEDMPAFNLNETRIAFMLSIEKFRYMVMADDRKRLMPLP
EDRVPPRGKELAFPEAVLLVDPVEPEFKGEVDDKYQYSCENKDNKVHGFICLDPPVGFWQ
ITPSNEFRTGGPIKQDLTSHVNPTTLAMFVSTHYGGQDFVIQFGSGEQWKKVFGPVFIYL
NSVADKNDTLSLWDDAKERMHKEVDCWPYSFASSEDFPKADQRGAIRGRLVVNDSFVEFC
IGKRCISKEYLSAKGAFVGLAPPGDAGSFQRECKGYQFWTNSDDEGYFSIQNVRPGDYNL
YAWVPGFIGDYKDEKFIAITAASDVDIGELVYEPPRSGPTLWEIGIPDRSAAEFYVPDPN
PQYINKLYVNQPENRFRQYGLWERYADLYPDQDLVFTVGRSDYKKDWFYAQVTRKVDDNA
YEPTTWKIKFNLESIDQNGSYTLRIALSSATFSILEVRVNEEEANPPHFSSGLIGSDNTI
ARHGVHGLYWLFNVEITAGQLLQGENIIYLKQARSVSALHGIMYDYIRLEAPPLSAMRI
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgattgtgccaaagcattcacaaatatcaactccagttctgcagcttcttcagcaagag
gaccaagtggtaatagataatggtatattccaactcagattgacaaatccaggaggaaaa
atcattggaattcaatataatggaattgaaaatctgttggaactcaacaacccaattttg
aatggagggttctgggacttaaactggagtgtacctggaacttctggaactagaggaaaa
tttgatgagattgaatgtaatagttttaaagttataacggaaactgaagaacagatagag
ctctcatttacaaggaaatgggatccttcacttcagggcgagcaatccccgttaacctta
gacataaggttcataattcttcgggattcgcctggtttttactcttacgctatttatgaa
cacaaagaggatatgccagcattcaacctcaatgaaaccaggatagctttcatgctcagc
atcgaaaagtttcggtacatggttatggcagatgataggaaaagactaatgccccttcct
gaagatcgcgtacctccaagagggaaggaattggcatttccagaagctgtcctgctagtc
gatcctgtagagccagaatttaaaggagaagttgacgacaagtatcaatattcgtgtgag
aacaaagataacaaagtccatggcttcatttgcttagatcctccagtgggattctggcaa
attacgccaagcaatgagttcagaacaggtggacctatcaaacaggatcttacatcccat
gttaatccaacaactctggctatgttcgtgagcactcattatggaggccaggatttcgtg
attcaatttggatcaggcgaacaatggaagaaagtttttggacctgtttttatatatctc
aattctgtagcagataagaatgatacattatccctatgggatgatgcgaaagaacggatg
cacaaagaagtcgactgctggccttatagttttgcgagttcagaagattttccaaaagct
gaccaaagaggtgccatccgtggtagattagtagtcaatgacagttttgtcgaattttgt
atcggcaaaaggtgtataagcaaggagtatttgtctgcaaagggtgcttttgtggggctc
gctccacctggagatgctggatcatttcaaagagaatgcaagggctaccaattctggacg
aactcagatgatgaaggctatttctcaatccaaaatgttcgtcctggggactataacctc
tatgcttgggtacctggcttcattggagattacaaagatgaaaaattcatagcaattact
gcagcttctgatgttgatattggtgaacttgtgtacgagcctccaagaagtggtcctaca
ttatgggaaattggtatccctgatcgttctgctgcagaattctacgttcctgaccctaat
ccacagtatatcaacaaactttacgtaaatcaaccagaaaacaggtttagacagtatgga
ttatgggagagatatgcagatttatatccagatcaagatttggtatttacagttggaagg
agtgactataaaaaagattggttctatgctcaggtgacaagaaaagttgatgataatgca
tatgaacctacaacatggaaaattaaattcaatttagaaagcattgatcagaatggaagt
tacacacttcgtattgcgctctcatctgcaactttctctatattggaggtaagggtgaat
gaggaagaagcaaatccaccacatttctcaagtggattgattggaagtgataatacaatt
gccagacatggagtccatgggctatattggttgtttaatgtggagataactgcaggacaa
ctccttcaaggagagaatatcatatatctcaaacaagcacggagtgttagtgctctccat
gggattatgtacgactatattcgtttggaagctcctcctctttccgccatgcgcatttag
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