Entry |
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Name |
(RefSeq) regulator of nonsense transcripts UPF2 isoform X1
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KO |
K14327 | regulator of nonsense transcripts 2 |
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Organism |
sdul Solanum dulcamara (climbing nightshade)
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:sdul00001]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129903675
03015 mRNA surveillance pathway
129903675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:sdul03019]
129903675
Messenger RNA biogenesis [BR:sdul03019]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
129903675
mRNA cycle factors
P-body specific factors
129903675
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
1:35350315..35378009
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AA seq |
1202 aa
MEHPEDECRVGVEHQEKHEDEEAVARHEEFKKSVESKMTLRQNNLNPERPDTGFLRTLDS
SIKRNTAVIKKLKQINEEQREGLMEELRNVNLSKFVSEAVTAICDAKLRAADIQAAVQIC
SLLHQRYKDFSPSLVQGLVKIFFPGKAAEDVDVDRNARAMKKRSTLKLLLELYFVGVVDD
TGIFVNIVKDLTSVEHLKDRDATQTNLSLLASFARQGRYLLGLPLAGQDILEGLFKALNV
TTDQKRFFRKAFQTYYDASVELLQSEHASLRQMEHENEKILSAKGELNEENASAYEKLRK
AYDQLYRGISGLAEALDMQPPVMPEDGHTTRVTSGEDASSPGGSKDSSVLEALWDDEDTR
AFYECLPDLRAFVPAVLLGEAEPKLNEQLAKVQEHSVDSTPDVDETQTAAHETAEGAADD
GAVQEDRNDKGKDKDEKDKEKTKEKLKEKGKDEKDKEPDKEKAREKEAERKGEGDKEKTK
GVEGTNLDSLLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLPYY
SRMVATLSTCMKDVSSMLLQLLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFRIAPPG
LVFSFLKACLDDFSHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDP
RHITLVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDLDKSSIEHVLRQLRKLPWSE
CEAYLLKCFMKVHRGKYGQIHLIASLTAGLSRYHDDFSVAVVDEVLEEIRVGLELNDYGM
QQRRIAHMRFLGELYNYELVDSSVIFDTLYLILVFGHGTSEQDVLDPPEDCFRIRMVITL
LETCGHYFDRGSSKRKLDRFLIHFQRYILNKGVLPLDIEFDLQDLFAELRPNMTRYASIE
EVNAALVDLEEHERIVTSEKANNEKHSETEKIPSRTTSGMSVNGQSLSNGIEENGLHEDI
VETESDSESGTIENVGHDDDEETDDWNRDDRCDTEGESDEGNGPGSDEEDEVHVRSKVAE
VDPLEEAEFERELRALMQESLDSRKLELRGRPTLNMTIPMNIFEGPTKDHRGVEGESGDE
TLDEGAGGSKEVPVKVLVKRGNKQQTKKMLIPRDCSLIQSTKQKEAAELEEKQDIKRLVL
EYNDREEEELNGLGNQPPSWTQSSGSRVAHRGNTWDAPGRGSGSRHRYLHHSGGGLYYGR
RR |
NT seq |
3609 nt +upstreamnt +downstreamnt
atggaacatcctgaggatgaatgtcgtgttggagtggaacaccaggagaaacatgaagat
gaggaagctgtggctcgtcatgaggaattcaaaaaatctgttgagtcaaagatgactctt
aggcagaataatctaaatccagaacgaccagacactggttttctaaggacattggattct
agtattaagcgcaatactgcagttattaaaaaactgaaacagattaatgaagagcagcga
gaaggtttgatggaagagttgcgtaatgtcaacttaagcaagtttgtaagtgaagcagtg
actgctatttgtgatgcaaagcttcgggccgcagacatacaagctgcagtgcagatctgt
tctttgcttcatcagcggtacaaggacttttcaccaagtcttgttcaaggacttgtgaaa
atcttctttccaggaaaagctgcagaggatgtggatgtggacaggaatgcgagggctatg
aaaaagcgtagcactttaaaacttcttttggaactttactttgttggagtcgttgatgat
actggcatctttgtgaacattgttaaggacctcacgagtgttgagcatttgaaggaccgt
gatgcaactcagactaatttgtcactccttgctagctttgctcgacaaggaagatacctg
cttgggcttccattggctggccaagatattcttgaagggcttttcaaggcccttaatgtg
actactgatcagaaaaggttctttaggaaggcgttccaaacatattatgatgcgtctgta
gaacttcttcagtctgagcatgcttcacttcggcaaatggagcatgaaaatgaaaagatt
ttatctgccaaaggtgaactgaatgaggagaatgcttctgcatatgaaaaactgcggaaa
gcttatgaccagctgtatcgtggcatctcaggattggcagaagcacttgacatgcaacct
ccggtgatgcccgaggatggtcatacaaccagggtaacatcgggggaggatgcatcatcc
cctggtggaagtaaagattcttctgtccttgaagccctgtgggatgatgaagatacaagg
gctttctatgaatgtctaccagatctcagagcatttgttccagctgtattgcttggagaa
gcagaaccaaagttgaatgaacaacttgcgaaggttcaagagcattcagttgattcaaca
cctgatgtagatgaaactcagactgctgcacatgagactgcagagggtgctgcagatgat
ggagctgtacaggaggacagaaatgataaaggcaaggataaagatgagaaggataaagaa
aagaccaaggaaaaattaaaagaaaagggtaaagatgaaaaggataaagagcctgataag
gaaaaagcaagagaaaaggaagctgaaagaaaaggagaaggtgataaggagaaaacaaaa
ggtgttgaaggaactaatctagatagtctgcttcagcggctacctggttgtgttagccgt
gatttgattgaccagttgacagtggagttttgctatctgaattccaagtccaataggaaa
aaacttgttagggcattgttcaatgtccccaggacatcactagagttgttgccatactac
tcacgcatggttgccactctgtcaacttgcatgaaggatgtgtcttctatgcttttacag
ttgttggaagaggagttcaactttttgataaataagaaggatcaaatgaatattgaaaca
aaaataaggaatattcgttttattggagagctctgcaaatttagaattgcaccacctggc
cttgttttcagttttctgaaggcttgtttagatgatttcagtcatcacaatattgatgtt
gcttgcaatcttctcgagacatgtgggcgttttctctaccgatctcctgaaactacaata
cgcatggcaaacatgttagaaatattgatgcgcctgaagaatgttaaaaatttggatcct
cgccacatcaccttagtggagaatgcatattacttatgtaagccaccagaaagatctgca
cgagtgtctaaagttcggcctcctctgcatcagtacataagaaaattgctcttttcggat
cttgacaagtcttcaatagagcatgtgcttagacagcttcgtaagcttccttggagtgaa
tgtgaggcataccttttgaagtgcttcatgaaggttcacaggggcaagtatggtcagatt
catttgattgcatcacttactgctggtttaagccgctatcatgatgatttttccgttgcc
gttgttgatgaggttctggaggagatcagggtgggattagagttgaatgactatgggatg
cagcaaagacgtattgcacacatgcgtttcctaggggagttgtataactatgaacttgtt
gattcctctgtgatatttgatacgctctatttgattctcgtttttggccatggaacgtca
gagcaagatgtattggatcctcccgaggattgtttccgcatcaggatggttattacgcta
cttgaaacctgtgggcactactttgatcgaggttcatcaaagagaaaacttgatcggttc
ctaatacatttccagagatacatattgaacaaaggtgtactccccctggatattgagttt
gatctgcaggacttgtttgctgaattacgtcctaacatgacgagatatgcatcaattgaa
gaagtcaatgctgctttagttgaccttgaggaacatgagcgcatagttacatctgaaaaa
gccaacaatgagaagcactctgagaccgagaaaattcccagcagaactacctctggaatg
tctgtaaatgggcaaagcctttcaaatggcattgaggaaaatggattgcatgaagatatt
gtggaaactgaaagtgattcagagagtggcaccattgagaatgtgggtcacgatgatgat
gaagagacagatgattggaatcgagatgataggtgtgacactgagggtgaatctgatgag
ggaaatggacctggttctgatgaggaggatgaagtacatgtcaggtcaaaggttgcagag
gttgatcctctggaggaagcagaatttgagagagagcttcgggccctgatgcaggaaagt
ttggattcaagaaaattggaattacggggaaggcctacactaaacatgacgataccaatg
aatatctttgagggcccaaccaaggaccatcgtggggttgaaggggagagtggtgatgag
acattggatgaaggggctggaggaagtaaggaggttccagtgaaggttcttgtgaagcga
ggtaataagcaacagacaaagaaaatgctcattcctcgtgattgctccctcattcagagc
acaaaacagaaagaagcagctgaacttgaagaaaagcaagacatcaagaggctggttctg
gagtacaatgatagagaggaggaagagcttaatgggttagggaaccagccaccaagctgg
acacaaagcagtgggagtagggttgctcataggggcaacacatgggatgcacctggtagg
ggcagtggctcacgtcatcgctatctgcatcattcaggtggcggcctttattatggcagg
agaagatga |