KEGG   Solanum dulcamara (climbing nightshade): 129903675
Entry
129903675         CDS       T09577                                 
Name
(RefSeq) regulator of nonsense transcripts UPF2 isoform X1
  KO
K14327  regulator of nonsense transcripts 2
Organism
sdul  Solanum dulcamara (climbing nightshade)
Pathway
sdul03013  Nucleocytoplasmic transport
sdul03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:sdul00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    129903675
   03015 mRNA surveillance pathway
    129903675
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sdul03019]
    129903675
Messenger RNA biogenesis [BR:sdul03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     129903675
   mRNA cycle factors
    P-body specific factors
     129903675
SSDB
Motif
Pfam: MIF4G Upf2
Other DBs
NCBI-GeneID: 129903675
NCBI-ProteinID: XP_055835194
LinkDB
Position
1:35350315..35378009
AA seq 1202 aa
MEHPEDECRVGVEHQEKHEDEEAVARHEEFKKSVESKMTLRQNNLNPERPDTGFLRTLDS
SIKRNTAVIKKLKQINEEQREGLMEELRNVNLSKFVSEAVTAICDAKLRAADIQAAVQIC
SLLHQRYKDFSPSLVQGLVKIFFPGKAAEDVDVDRNARAMKKRSTLKLLLELYFVGVVDD
TGIFVNIVKDLTSVEHLKDRDATQTNLSLLASFARQGRYLLGLPLAGQDILEGLFKALNV
TTDQKRFFRKAFQTYYDASVELLQSEHASLRQMEHENEKILSAKGELNEENASAYEKLRK
AYDQLYRGISGLAEALDMQPPVMPEDGHTTRVTSGEDASSPGGSKDSSVLEALWDDEDTR
AFYECLPDLRAFVPAVLLGEAEPKLNEQLAKVQEHSVDSTPDVDETQTAAHETAEGAADD
GAVQEDRNDKGKDKDEKDKEKTKEKLKEKGKDEKDKEPDKEKAREKEAERKGEGDKEKTK
GVEGTNLDSLLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLPYY
SRMVATLSTCMKDVSSMLLQLLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFRIAPPG
LVFSFLKACLDDFSHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDP
RHITLVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDLDKSSIEHVLRQLRKLPWSE
CEAYLLKCFMKVHRGKYGQIHLIASLTAGLSRYHDDFSVAVVDEVLEEIRVGLELNDYGM
QQRRIAHMRFLGELYNYELVDSSVIFDTLYLILVFGHGTSEQDVLDPPEDCFRIRMVITL
LETCGHYFDRGSSKRKLDRFLIHFQRYILNKGVLPLDIEFDLQDLFAELRPNMTRYASIE
EVNAALVDLEEHERIVTSEKANNEKHSETEKIPSRTTSGMSVNGQSLSNGIEENGLHEDI
VETESDSESGTIENVGHDDDEETDDWNRDDRCDTEGESDEGNGPGSDEEDEVHVRSKVAE
VDPLEEAEFERELRALMQESLDSRKLELRGRPTLNMTIPMNIFEGPTKDHRGVEGESGDE
TLDEGAGGSKEVPVKVLVKRGNKQQTKKMLIPRDCSLIQSTKQKEAAELEEKQDIKRLVL
EYNDREEEELNGLGNQPPSWTQSSGSRVAHRGNTWDAPGRGSGSRHRYLHHSGGGLYYGR
RR
NT seq 3609 nt   +upstreamnt  +downstreamnt
atggaacatcctgaggatgaatgtcgtgttggagtggaacaccaggagaaacatgaagat
gaggaagctgtggctcgtcatgaggaattcaaaaaatctgttgagtcaaagatgactctt
aggcagaataatctaaatccagaacgaccagacactggttttctaaggacattggattct
agtattaagcgcaatactgcagttattaaaaaactgaaacagattaatgaagagcagcga
gaaggtttgatggaagagttgcgtaatgtcaacttaagcaagtttgtaagtgaagcagtg
actgctatttgtgatgcaaagcttcgggccgcagacatacaagctgcagtgcagatctgt
tctttgcttcatcagcggtacaaggacttttcaccaagtcttgttcaaggacttgtgaaa
atcttctttccaggaaaagctgcagaggatgtggatgtggacaggaatgcgagggctatg
aaaaagcgtagcactttaaaacttcttttggaactttactttgttggagtcgttgatgat
actggcatctttgtgaacattgttaaggacctcacgagtgttgagcatttgaaggaccgt
gatgcaactcagactaatttgtcactccttgctagctttgctcgacaaggaagatacctg
cttgggcttccattggctggccaagatattcttgaagggcttttcaaggcccttaatgtg
actactgatcagaaaaggttctttaggaaggcgttccaaacatattatgatgcgtctgta
gaacttcttcagtctgagcatgcttcacttcggcaaatggagcatgaaaatgaaaagatt
ttatctgccaaaggtgaactgaatgaggagaatgcttctgcatatgaaaaactgcggaaa
gcttatgaccagctgtatcgtggcatctcaggattggcagaagcacttgacatgcaacct
ccggtgatgcccgaggatggtcatacaaccagggtaacatcgggggaggatgcatcatcc
cctggtggaagtaaagattcttctgtccttgaagccctgtgggatgatgaagatacaagg
gctttctatgaatgtctaccagatctcagagcatttgttccagctgtattgcttggagaa
gcagaaccaaagttgaatgaacaacttgcgaaggttcaagagcattcagttgattcaaca
cctgatgtagatgaaactcagactgctgcacatgagactgcagagggtgctgcagatgat
ggagctgtacaggaggacagaaatgataaaggcaaggataaagatgagaaggataaagaa
aagaccaaggaaaaattaaaagaaaagggtaaagatgaaaaggataaagagcctgataag
gaaaaagcaagagaaaaggaagctgaaagaaaaggagaaggtgataaggagaaaacaaaa
ggtgttgaaggaactaatctagatagtctgcttcagcggctacctggttgtgttagccgt
gatttgattgaccagttgacagtggagttttgctatctgaattccaagtccaataggaaa
aaacttgttagggcattgttcaatgtccccaggacatcactagagttgttgccatactac
tcacgcatggttgccactctgtcaacttgcatgaaggatgtgtcttctatgcttttacag
ttgttggaagaggagttcaactttttgataaataagaaggatcaaatgaatattgaaaca
aaaataaggaatattcgttttattggagagctctgcaaatttagaattgcaccacctggc
cttgttttcagttttctgaaggcttgtttagatgatttcagtcatcacaatattgatgtt
gcttgcaatcttctcgagacatgtgggcgttttctctaccgatctcctgaaactacaata
cgcatggcaaacatgttagaaatattgatgcgcctgaagaatgttaaaaatttggatcct
cgccacatcaccttagtggagaatgcatattacttatgtaagccaccagaaagatctgca
cgagtgtctaaagttcggcctcctctgcatcagtacataagaaaattgctcttttcggat
cttgacaagtcttcaatagagcatgtgcttagacagcttcgtaagcttccttggagtgaa
tgtgaggcataccttttgaagtgcttcatgaaggttcacaggggcaagtatggtcagatt
catttgattgcatcacttactgctggtttaagccgctatcatgatgatttttccgttgcc
gttgttgatgaggttctggaggagatcagggtgggattagagttgaatgactatgggatg
cagcaaagacgtattgcacacatgcgtttcctaggggagttgtataactatgaacttgtt
gattcctctgtgatatttgatacgctctatttgattctcgtttttggccatggaacgtca
gagcaagatgtattggatcctcccgaggattgtttccgcatcaggatggttattacgcta
cttgaaacctgtgggcactactttgatcgaggttcatcaaagagaaaacttgatcggttc
ctaatacatttccagagatacatattgaacaaaggtgtactccccctggatattgagttt
gatctgcaggacttgtttgctgaattacgtcctaacatgacgagatatgcatcaattgaa
gaagtcaatgctgctttagttgaccttgaggaacatgagcgcatagttacatctgaaaaa
gccaacaatgagaagcactctgagaccgagaaaattcccagcagaactacctctggaatg
tctgtaaatgggcaaagcctttcaaatggcattgaggaaaatggattgcatgaagatatt
gtggaaactgaaagtgattcagagagtggcaccattgagaatgtgggtcacgatgatgat
gaagagacagatgattggaatcgagatgataggtgtgacactgagggtgaatctgatgag
ggaaatggacctggttctgatgaggaggatgaagtacatgtcaggtcaaaggttgcagag
gttgatcctctggaggaagcagaatttgagagagagcttcgggccctgatgcaggaaagt
ttggattcaagaaaattggaattacggggaaggcctacactaaacatgacgataccaatg
aatatctttgagggcccaaccaaggaccatcgtggggttgaaggggagagtggtgatgag
acattggatgaaggggctggaggaagtaaggaggttccagtgaaggttcttgtgaagcga
ggtaataagcaacagacaaagaaaatgctcattcctcgtgattgctccctcattcagagc
acaaaacagaaagaagcagctgaacttgaagaaaagcaagacatcaagaggctggttctg
gagtacaatgatagagaggaggaagagcttaatgggttagggaaccagccaccaagctgg
acacaaagcagtgggagtagggttgctcataggggcaacacatgggatgcacctggtagg
ggcagtggctcacgtcatcgctatctgcatcattcaggtggcggcctttattatggcagg
agaagatga

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