Solanum dulcamara (climbing nightshade): 129903692
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Entry
129903692 CDS
T09577
Name
(RefSeq) pre-mRNA-processing protein 40A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129903692
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdul03041
]
129903692
Spliceosome [BR:
sdul03041
]
Complex A
U1 snRNP components
U1 related factors
129903692
Complex B
129903692
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
Motif
Other DBs
NCBI-GeneID:
129903692
NCBI-ProteinID:
XP_055835208
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All DBs
Position
9:48306971..48334208
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AA seq
940 aa
AA seq
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MANNSHFTGMQPPIPPLAGPPQSAIPSMSLQFQPMLPLQQAQPYISGSSQQFHPLGHANV
VMPPQPSQIQFPQPMQQVAGRPVVGGHGMPQGPPIPHDFQRNPLISNNHMPGSGGPSLPL
SSSYNQVNVDSSSSQYQTQIHDHRFPSGVQPWMPTSNHNVNSATTMQNTGELAPPLVVPE
ANYRVDSVENTPSDWIEHTSRNGKKYYYNRRTRISSWEKPLELMTEMERADASTDWREVT
SPEGRKYYYNKVTRKSKWKMPDEVKFAREKDTITHASDFGSISSVKTSSPGADGSFVSAQ
GAMSSPISVSPVANLPTIVASESSSLSGKVSSPTIDAVEMQNSSEPASPAVANSEKIGIA
VTLGNSAAIPVSSETTSAQDAVAYEDGVSPENREEVKQDAAMTEIGSATPSEEKTVELGP
LVYESKVEAKSAFKTLLESANIGSDCTWDQAMRAIINDRRYGALKSLGERKQAFNEYLSQ
RKKLEAEERRIKQKKAREDFRIMLEDCKELLASSRWSKAISIFEHDERFKAVERAKDRED
LFEDYVEELEKKERARALEEQKRSRVEYLEFLKSCDFIKASSQWRKVQDRLEADERCPHL
EKIDRLEIFQEYIRDLEREEEEQRKLRMEELRKAERKNRDEFRKLMEEHVAVGILNAKTN
WRDYCVKIKDIAAYLSVSSNTSGSTAKDLFADVMDELEKQYHDDKSRIRDAVRMTEIGLT
STWTLDDFKDAIAKYISSPPISDTNLKFVFEELLERAREREEKEAKRRKRLADEFYELLH
ASKEITASSKWEDCKSFFGDRIMGDESLLLEIFDKFVNELKEKAKEKDWKRQEDKARKEK
ERKDREKKKERHRRDKDRGDKSRKERARTKKDGIDSDKAETYSFEEIKRSGSDRDKKHRK
RHMSSFDDDENEKDHSRSSYRHDSDYKKLKQMDQHAEFGS
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atggctaataattcacatttcactggcatgcagcctcctatacctcctctggctggtcct
cctcagagtgctattccatccatgtcgctgcagttccagcctatgcttccactccagcag
gcacagccgtatatttccgggtcgtctcaacaatttcatccacttggacatgcaaatgtt
gtgatgcctcctcaaccttcacaaatccagtttcctcaacctatgcaacaggttgctggt
agacctgtagtaggagggcatggtatgccacagggaccacctattcctcatgattttcag
cgaaaccctctgatatcaaataaccacatgcctggttctggtggtccaagtttgcctcta
tcttcttcatataatcaggtaaatgtagattcttcaagctcccagtatcagacacagata
catgatcaccggtttccatcaggggtacaaccctggatgccaacaagtaatcataatgtg
aattctgcgacaactatgcagaatactggagaactagcacctccgttggttgttccagaa
gcaaattacagggttgactctgttgagaatactccgtcagattggattgagcatacttct
cgaaatgggaaaaaatactattataatagaaggaccagaatctctagctgggagaaacct
ctagagctgatgacagaaatggagagggcggatgcatcaactgactggagagaagttaca
agtcctgagggaagaaagtattactacaacaaggttacaagaaagtcaaaatggaaaatg
cctgatgaagtcaagtttgctcgtgaaaaggacactattacacacgcctctgattttgga
tccatttctagtgttaaaacatcatccccgggtgcagatggttcatttgtctcggcacaa
ggagctatgtcaagcccaatttctgtgtcaccagttgccaacttaccaactattgtggct
tcagaatcatcaagtttatctggtaaggtttcttctccgacgattgacgcagtcgaaatg
cagaattcttcagaacctgcttcgccagctgttgctaattctgagaaaattggaatagca
gtaaccttgggaaattctgcggcgataccagttagttctgagactacttcagctcaagat
gcagtagcatatgaggatggagtttctccggagaatagggaggaagttaagcaagatgct
gcaatgactgaaataggaagtgctactccatcagaagagaaaacagtcgagctgggacca
ttagtttatgagagcaaagtggaggcaaaaagtgcattcaaaactcttttggaatctgct
aatattgggtctgactgcacatgggatcaggccatgagggcaataattaatgaccgaaga
tatggtgctctaaaatcccttggtgagcggaagcaagcttttaatgagtatctgagccaa
aggaaaaaactggaagctgaagagagacgtattaaacagaagaaagctcgggaggatttc
aggataatgttagaagattgcaaggagctgttagcatcctcaagatggagtaaggcaatc
tccatattcgaacatgatgaacgttttaaagctgttgagcgagctaaagaccgtgaggac
ctttttgaagattatgtggaggaacttgagaaaaaggagcgtgcaagggcattggaagag
cagaagcgcagtagagtggagtatttagaatttttaaaatcctgtgactttattaaggcc
agtagccagtggcggaaagttcaggaccgcttagaagctgatgaaagatgcccccacctt
gagaaaattgatcgcttggagattttccaggaatatatacgtgatttagagagggaagag
gaggagcaaaggaaactgcggatggaagaattgaggaaagcagaacgtaaaaatcgtgat
gagttccgaaaactgatggaagagcatgttgctgtgggaatacttaatgcaaaaactaac
tggcgtgattattgcgtcaaaatcaaagatatagctgcatatctgtctgtctcatcaaat
acttcagggtcaacagcgaaggacttatttgcagatgttatggatgagctggagaaacag
tatcatgatgacaagtcacgaattagagatgcagttaggatgaccgagattggactgaca
tcaacctggacgcttgacgattttaaggatgcaattgcaaagtatattagctctccacca
atatcagataccaacttaaagtttgtctttgaagagttactggaaagggccagggagaga
gaagaaaaagaagctaaaaggcgtaaacgtctagcagatgagttctatgaacttcttcat
gcatcaaaggaaattactgcatcatcaaaatgggaggactgcaaatccttcttcggagat
agaataatgggcgacgagagcttgctgctggaaatatttgacaaatttgttaatgaacta
aaagaaaaggcaaaagagaaggactggaagcgtcaagaggataaggcaagaaaagagaag
gaaaggaaagatagagaaaagaagaaggaaagacatagaagggataaagacagaggggat
aagagcaggaaagagagagcaagaaccaagaaagacggtatagacagtgacaaggctgag
acatacagtttcgaggagatcaaaaggtcaggaagtgacagagataagaaacatcggaag
cgccatatgagttcctttgatgacgatgaaaatgagaaagatcattcaagaagttcttac
agacatgacagtgattataagaaactgaaacagatggaccagcacgcggagtttggaagc
taa
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