Solanum dulcamara (climbing nightshade): 129904066
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Entry
129904066 CDS
T09577
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129904066
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129904066
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
129904066
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_16
TPR_8
TPR_14
TPR_12
TPR_19
TPR_CcmH_CycH
TPR_7
TPR_9
TPR_6
ARM_TT21_C
TPR_NPHP3
UNC80_C
Y2_Tnp
Motif
Other DBs
NCBI-GeneID:
129904066
NCBI-ProteinID:
XP_055835571
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All DBs
Position
9:complement(147849..163595)
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AA seq
1176 aa
AA seq
DB search
MSEEDDAAIRRLEEAVVSQPGDPCLHFDLGVLLWDKGGELPEKAAQHFLIAAKLNPQNAA
AFTYLGHYYARVAVDSQRAIKCYQRALGLNPDDSIAGEAICDILDAAGKETLEIAVCREA
SHKSPRAFWALCRLGYLLVNQKKWSEAVQSLQQSIRGYPTCADLWEALGLSYQQMGMFTA
AVKSYGRAIELEETRVFALVESGNVYLMLGSFRKGIEQFRQALQISPLNLSAHHGLASAL
LSLAKECIDSGAFKWGASLLEEASKMALASTSIVGNISCAWKLLGDIQLTYAKCFPWMDE
GLGSGADENSFSNSILSWKRICCLEVRSACCSYQRALHLSPWQANVYTDVAIASELLFSL
KENCKDDMNSWFVSEKMCLGGLLLEGWNSEFWVALGCLSDHSALKQHAFIRALQLDVSLA
VAWAHLGKLYRQEGESQLAQLAFDRARSIDPSLSLPWSGMSADAAARNLKPDEAYECCLR
AVQIFPLAEFQTGLVKLALQSGYLRSPEAFGAIQQALQRAPQYPESHNLKGLVCEARSDY
ESAVASYRLARLAARVFAGKVSKSYLADISINLTRSLCMAGNADDAIEECKYLESKGLLD
VEGLQLYALSYWKLGKYDLALSMAKRLVPSALPTEHPLAAASVSFICRLVYHISGKELAI
RNILQLPKRAFQNSRVRLVASAIHALDESHQLDSVVSSVRESLSSSKEIPALDFLATLGL
LVKHGSKDCLEVQKGVNYLRRALHISPNSHLIRTLLGYLLVSSKEWKDVHISARCFIVDP
SEHQKKEGVKSSVEIFGAGAVACFTVGSGKKTLPMSICRENSTLGCKTIKLLQKCVHQEP
WDHHSYYLLVLNYLQKAREEKFPRNLCVVLERLISVALRSELYAKEDISSQYQKFQLLLC
AAEVSLRCGNNFKCIMHAKSALEMQIPDNCLFFAHLLLCRAYAVEDNYSGLHEEYIRCLE
LKTDYHIGWICLKFLESRYKLHSDSSSLALAFRECGKEIKTSWNMWIAMYNLVQGLTAVW
NGEFIGAEESLAQACSLAGGESFLFLSHGAICMEIARQQSDSDFLSLAIRSLKKAKDSSS
IPLPFVSLLLAQAEASLGSESKWEKNLIEEWSSWRPEIRPAELFFQMHLLSRRLTEGSGA
ISNLEPSTSPLRWILQAIHINPSCLRYWRALVKFME
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagaagacgatgctgctataagacggttagaagaagcggttgtctcccagccg
ggcgacccttgtctccactttgatctcggggtcttgctatgggacaagggaggagaattg
ccagagaaagccgcacaacattttctcatagcagccaagctcaacccacaaaacgctgct
gctttcacatatttgggacattactatgctcgagtagctgtcgactctcagagggctatc
aagtgttatcagagagccctcggccttaatcccgacgattcaattgctggggaagcaatt
tgtgatatactggacgcagctggaaaagagaccttggaaatagctgtatgccgtgaagct
tcacacaagtcgcccagggccttttgggctttatgcagattgggttaccttctggttaac
caaaagaagtggtccgaagcagtgcagagtcttcagcagtccatcagaggctatcccaca
tgtgctgatttgtgggaggccctgggtctatcctaccagcaaatgggcatgtttacagcg
gctgttaagtcctatggaagagctattgaattggaggaaacaagggtatttgcgctggtg
gaaagtggaaatgtctatttgatgcttggttcgtttcgaaagggaatagagcagtttcgg
caagctttacaaatctcacctctgaatttgtccgcacatcatggtcttgcctctgcactc
cttagtttggcaaaggaatgtattgattctggtgcctttaaatggggagcttcactctta
gaggaagcttcaaagatggctctagcaagtacttccattgttggcaatatatcttgtgct
tggaagctgcttggagatattcagctcacatacgcaaaatgttttccatggatggatgaa
ggattgggctcaggagcggacgaaaattcattcagtaattcgatcctgtcatggaagaga
atctgctgtttagaagtcagatctgcttgttgctcctaccagcgggcattgcatttgtcc
ccttggcaagctaatgtgtatactgatgttgccattgcatctgagcttcttttctcgtta
aaggagaactgtaaagatgacatgaactcttggtttgtgtctgaaaagatgtgccttgga
ggcttattacttgaaggttggaatagcgagttttgggtagccttagggtgtttatctgat
cattctgcattgaagcaacatgctttcatacgggcactgcagttggatgtttctcttgca
gttgcatgggcacatcttggaaagctctataggcaggagggggaaagtcaattggctcag
ctagcatttgatcgtgcaagaagtattgatccttcactttcattgccgtggtcaggcatg
tcggctgatgctgctgcaaggaatctgaaaccagacgaggcttatgagtgctgtctgcgg
gcggttcagatctttccacttgcagaattccaaacaggtctagttaagcttgctctgcag
tctggttatctgcgatctccagaggcatttggagccatccagcaggctttgcagcgtgca
cctcagtatcctgaatctcacaatctgaaagggctagtttgtgaggcacggagtgattat
gaaagtgctgttgcctcatataggctggcacgccttgctgccagagtttttgcaggaaaa
gtttcaaaatcatatcttgcagatatatctattaatttgaccaggtcactttgtatggca
ggaaatgctgatgatgctattgaagaatgtaaatatttggaaagcaaaggtcttctggat
gtagaaggtttgcaactttatgcgctttcttattggaaactaggcaaatatgaccttgct
ctttcgatggcaaagagactcgtcccatctgctttaccaacagagcatccattggctgct
gcctccgtcagtttcatctgtagattagtatatcatatttcagggaaggaattagctatt
agaaacatcttgcaactgccaaaaagagctttccagaattcaagagttaggcttgtagca
tctgctattcatgcattagatgaaagtcatcagcttgactcagttgtttcaagtgttcgt
gagtctctttcatctagcaaagagattcctgcactagatttcctggccacactgggctta
ctagtcaaacatggatctaaggactgcctagaagttcagaagggagtcaattatctaaga
agagctcttcatatttctccaaacagtcatttgataaggacccttcttggctatctatta
gtatccagcaaagaatggaaagatgttcacatttcagctcgatgcttcatagtggatcct
tctgaacatcagaaaaaggaaggtgttaaatccagtgttgagatttttggtgctggagca
gttgcttgctttactgtggggagcggcaagaagacattacccatgtccatctgtagagaa
aattcaacattggggtgcaaaacaatcaagctgctgcagaagtgtgtccatcaggagcct
tgggaccatcattcgtattacctccttgtactaaactatcttcagaaggcgcgggaggag
aaattccctcgtaacctgtgtgttgttcttgagagattaataagtgtggctcttcgaagt
gagctttatgcaaaggaggacatatcttcccagtaccaaaagttccagcttctgctttgt
gccgcagaggttagtttgcgttgtgggaataatttcaagtgcattatgcatgcaaaaagt
gctctagagatgcagattccagataactgcctcttctttgcacacttgctactgtgtcgt
gcctatgctgtggaagataattattcagggcttcatgaagaatacataaggtgcttggag
ctcaaaactgattatcatattggttggatttgtcttaagtttcttgaaagtcgatacaag
ctgcactcagattccagttcactagccttggcctttcgagagtgtggcaaagaaattaaa
acttcgtggaacatgtggattgctatgtataatttggttcaaggtctaactgcagtatgg
aatggggaatttattggtgcagaagagtcccttgcacaagcttgctcgttagctggtggc
gagagtttcctttttcttagccatggtgctatttgcatggagattgccaggcagcagtcc
gattcagactttttatcacttgctattagaagtctgaagaaagcaaaagacagttcttcg
ataccgctaccctttgtctcgctactactggcacaagcagaagctagcctcggctctgaa
tcaaagtgggaaaagaacctcattgaggaatggtcatcttggcgaccagaaattaggcct
gctgaactatttttccagatgcatttgctttctagacggctgacagaaggttctggagct
atatccaatctggagccatctacaagtcctctaagatggatacttcaagctatccatatc
aatccgtcttgtttgagatattggagagctttggtgaaatttatggagtaa
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integrated database retrieval system
