Solanum dulcamara (climbing nightshade): 129904105
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Entry
129904105 CDS
T09577
Name
(RefSeq) uncharacterized protein LOC129904105
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03013
Nucleocytoplasmic transport
sdul03015
mRNA surveillance pathway
sdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129904105
09122 Translation
03013 Nucleocytoplasmic transport
129904105
03015 mRNA surveillance pathway
129904105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129904105
03041 Spliceosome [BR:
sdul03041
]
129904105
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
129904105
Spliceosome [BR:
sdul03041
]
Complex C
Other components
EJC/TREX
129904105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
129904105
NCBI-ProteinID:
XP_055835610
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Position
9:10426147..10434298
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AA seq
876 aa
AA seq
DB search
MSDYPVLDNRPINKWKVAELREELKRRNLVTKGLKDDLVRRLNEAICIEMEAAAVEESKD
DDRNIDSASGLEDTEPEPDHFKLGDDVLEHPQNEVTKGSDHITGSAYGLENAQPNINPAT
LIDNVQKQYQDEVNDIDGDVARASTKNCLVGIDQNNVLDEVATGGNDDVLKHHQNEVNDI
DGDVSSASTKNSLVEIDQNKVLDEVATGDTADGESKHLEAPFGSTSVISEIASTDQLVED
KLDKEHKVIDSSQDNYVVDGVSEVRDGSIPGSNTRQDIEDMKISSYEGVLEDNLRRQEND
VEVTPATSKEALKNNSIKLDNEGLKLSGMDAEPDMSNPATQVYEVNPNLGSQVKSDSFST
DTLPINENKDLNDNLNADNVKLETEVVRQEMELQSSSKDLSGVGSSHPLDGQMPHEMQGL
VGETDDVKSSDVKFSMKNDNADQVSVDVSKVEHGLESKTPNNSEQTDIQFEKARTLGDVV
APSLSPKKIEASAEDKHGLAASGDDTKDFSKITDVVDGENMEKINLDQSSADDSMEEDVV
ETKHVDFDHISQKENDKTEEFVTGMTEEPKVRPSGSSDAMQLDIPSEKVDSPQETKDKSL
DLSEKRKFQDEAGGESKEPAKRQRRWNTESLKTAEPQNSSIALTKKVVQPTPTKPILGRT
NSTVGGDSPKERFVPKSSKTATTSLKIENFLRPFTLKAVQELLARTGEVCSFWMDQIKTH
CYVTYSSVEEAIETRNAVYNLQWPPNGGRLLAADFVDPQQVQTKIEGQEPASPPKVTSPA
VPPASSSFQAPPAQQQGRKQQAELEHSLARQPPLAPPSAPPTKEMLPSPVADKNDPPIVT
LDDLFRKTKATPRIYYLPLTDEEVAKKLAIRGNAKH
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgtcggattaccctgtgcttgataatcgtccaattaataaatggaaagtagcagaatta
agggaagagcttaagaggaggaacttagtgacaaaaggtttgaaggatgatctggttagg
cgactaaatgaagctatctgcatagaaatggaagctgcagcagttgaagagagcaaggat
gatgatcgtaacattgattctgccagtggtcttgaagatactgaaccagagcctgatcat
tttaaattgggcgatgatgttctggagcatccccaaaatgaagttactaagggttctgat
catattactggttctgcctatggtcttgaaaacgctcaaccaaatattaatcctgctaca
ttgattgataacgttcagaagcaataccaagatgaagttaacgatattgacggtgatgtt
gctagggccagcaccaagaattgtcttgttggaatagaccagaacaatgtcttggatgag
gttgcaactggaggtaatgatgatgttctgaagcatcaccaaaacgaagttaacgatatt
gatggtgatgtttccagtgccagcaccaagaattctcttgttgaaatagaccagaacaaa
gtcttggatgaggttgcaactggagataccgctgatggagaatcaaaacatttggaggca
ccttttggtagcactagtgttataagtgagattgcatctactgatcaattagttgaagac
aaacttgataaggaacacaaggttattgattcttctcaggataattatgttgttgatggg
gtatctgaagtccgggatggttctattccaggcagtaacactagacaggacattgaggat
atgaaaatttcatcttatgagggagtgcttgaggacaaccttaggagacaagaaaatgat
gtggaggtaaccccagcaacatcaaaggaagccttgaaaaacaacagcattaagttggat
aatgagggtcttaaactctcaggcatggatgctgagccagatatgtccaatccagccact
caggtatatgaggtcaaccctaatttagggtctcaagtaaaatctgactcattttctact
gatactttgcccattaatgaaaataaagatttaaatgataatttgaatgctgataatgtc
aaattagaaactgaagttgttaggcaagagatggagctgcagtcatccagcaaagaccta
tcaggtgttggtagctctcatccattggatggtcagatgccacatgagatgcagggtctt
gttggagaaactgatgatgtcaaatcttcagatgtgaaatttagcatgaaaaatgacaat
gcagatcaggtttctgttgacgtttccaaggtagagcatggtttggagagtaagactcca
aataatagtgagcaaaccgatatacagtttgaaaaagctagaactttaggtgatgttgta
gcgcctagtttgtcacccaagaaaattgaggcatctgctgaagataaacatggtcttgct
gcttccggtgatgatacaaaagattttagcaagataactgatgtagtggatggtgagaat
atggaaaagataaacttggatcagtcttcagctgatgattccatggaggaggatgtagtg
gagacaaagcatgtggattttgatcatatatctcagaaggagaatgataagactgaagag
tttgttacgggaatgacagaagagcccaaagttcggccaagtggttcttctgatgcaatg
cagctagacattccttctgagaaggttgattctcctcaagaaactaaagataagtcactt
gatttgtcagagaagagaaagtttcaagatgaagcaggtggtgagagtaaagagcctgca
aaaaggcagcgtagatggaacactgagagtttgaagactgctgagccccaaaattcaagt
attgctttaacaaagaaggttgttcagcccacccctaccaaacccatccttggcaggact
aactctacagttggtggggattcacccaaggagcgctttgtaccaaagtcttcaaaaaca
gccactacttctctcaaaattgagaatttcttgcggccttttacgctgaaagctgtgcaa
gagctccttgcaagaactggtgaagtctgcagtttctggatggaccagataaagacccat
tgctatgtcacgtattcttcggtagaagaagccatagagaccagaaatgctgtgtacaat
ctccaatggccaccaaatggaggtcgtctcctggctgcagattttgttgatccccaacag
gtgcaaaccaagatagagggtcaggaacctgcttctccaccaaaagttaccagtcctgct
gtgcctccagcttcatcatcttttcaagcaccacctgctcagcagcagggtcgcaaacag
caagctgagttggaacattcactcgcacgccagccaccacttgctccacctagtgctcct
ccaacaaaagagatgctgccttcacctgttgctgataaaaatgaccccccaattgtaact
ttggatgacctcttcagaaagaccaaagccactccccgtatctattatttaccgctgaca
gatgaagaagttgctaaaaagcttgccattaggggtaatgctaagcattag
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