Solanum dulcamara (climbing nightshade): 129904122
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Entry
129904122 CDS
T09577
Name
(RefSeq) replication factor C subunit 2 isoform X1
KO
K10755
replication factor C subunit 2/4
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03030
DNA replication
sdul03410
Base excision repair
sdul03420
Nucleotide excision repair
sdul03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
129904122
03410 Base excision repair
129904122
03420 Nucleotide excision repair
129904122
03430 Mismatch repair
129904122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdul03032
]
129904122
03036 Chromosome and associated proteins [BR:
sdul03036
]
129904122
03400 DNA repair and recombination proteins [BR:
sdul03400
]
129904122
DNA replication proteins [BR:
sdul03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
129904122
DNA Replication Termination Factors
ELG1-RFC complex
129904122
Chromosome and associated proteins [BR:
sdul03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
129904122
DNA repair and recombination proteins [BR:
sdul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
129904122
Check point factors
HRAD17(Rad24)-RFC complex
129904122
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_lid_RFC1
RCF1-5-like_lid
AAA_22
Rad17
RuvB_N
AAA_11
Mg_chelatase
AAA_assoc_2
AAA_16
nSTAND3
SLFN-g3_helicase
AAA_5
AAA_14
nSTAND_NTPase5
ResIII
DEAD
AAA_24
AAA_2
PhoH
AAA_18
AAA_28
AAA_19
AAA_7
AAA_30
NPHP3_N
RNA_helicase
AAA_25
DNAX_ATPase_lid
Gp44_lid
Parvo_NS1
Cdc6_lid
TIP49_C
DUF815
NB-ARC
TIP49
VP2_lagovir
bpMoxR
ATPase_2
Motif
Other DBs
NCBI-GeneID:
129904122
NCBI-ProteinID:
XP_055835629
LinkDB
All DBs
Position
9:17607079..17615121
Genome browser
AA seq
339 aa
AA seq
DB search
MAPVMQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSNRQSGYPCPPFKIIIL
DEADSMTQDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMGS
RILHICKEEGLNLDSEALSALSSISQGDLRRAITYLQSAARLFGSSISAKDLISVSGVIP
NEVVQAIFSACRSGNFDLANKEVNNVVADGYPVSQMLYQLYDIVVDADDISDEQKARICK
KFAEADKCLVDGADEYLQLLNVASTTMQALSNMPQEMAF
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atggcgccagttatgcaaagctctcagccatgggtcgagaaatatcgaccgaagcaagtg
aaggacgtagctcaccaggatgaggtcgttcgagtcctcacaaacactctcgagacctct
aactgcccgcatatgttgttttatggtcctcctggaactggaaagacgaccactgctctt
gccattgcccatcagctttttggacctgagctgtataagtcaagggtattggagctaaat
gctagtgatgaccgtggtatcaatgtagttcgcacaaaaattaagaactttgctgctgtt
gctgtaggttctaatcggcaaagtggttatccttgcccaccttttaagatcataatcctt
gatgaagcagattcaatgactcaagatgctcaaaatgccttgcgacgcactatggagaca
tattcaaaagttacaagattcttcttcatttgtaattacattagcaggatcatagagcca
ctcgcttccagatgtgcgaagtttagattcaagccacttactgaagaaataatgggcagc
cgaatattgcatatttgtaaagaggaaggtcttaatcttgattcagaggctctttctgcc
ctcagttccatttctcaaggtgatttgcgaagggctattacatacttacaaagtgctgct
cggttatttggatcttccatatcagcaaaggacctaattagtgtgtctggggtcatccca
aatgaagttgttcaggctatattctcagcttgcagaagtggcaattttgacttggcaaac
aaagaagtgaacaatgtcgttgcagacggatatcctgtttctcagatgctgtatcagttg
tatgatatagtagttgatgcagacgacatttctgatgaacagaaagcaagaatatgcaag
aaatttgctgaagcagacaagtgtcttgttgatggagcagatgagtatttgcaacttttg
aatgttgcaagcaccacaatgcaagcgcttagcaacatgccacaagagatggcattttga
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