KEGG   Solanum dulcamara (climbing nightshade): 129904723
Entry
129904723         CDS       T09577                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A-like
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
sdul  Solanum dulcamara (climbing nightshade)
Pathway
sdul03030  DNA replication
sdul03410  Base excision repair
sdul03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sdul00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    129904723
   03410 Base excision repair
    129904723
   03420 Nucleotide excision repair
    129904723
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sdul03032]
    129904723
   03400 DNA repair and recombination proteins [BR:sdul03400]
    129904723
Enzymes [BR:sdul01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     129904723
DNA replication proteins [BR:sdul03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    129904723
DNA repair and recombination proteins [BR:sdul03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      129904723
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 DNA_pol_B zf-DPOE zf_DPOE_2 RNase_H_2 DNA_pol_B_exo2
Other DBs
NCBI-GeneID: 129904723
NCBI-ProteinID: XP_055836278
LinkDB
Position
9:75934717..75971592
AA seq 2218 aa
MNAAENSRRWDRRDTRFSKKQKLILNSEEQLESKLGFDVFTEGDKRLGWLLTLASSSWED
QETRKVYSCVDLYFVCQDGSTFKAKYKFRPYFYVATKDKMEMDVDSYLRRRYESQIADIE
VLEKEDLDLKNHLSGLHRSYLKISFDTVQQLMDVKRDLTHIVERNQTKFDTIEAYESILT
GKSKQRGQDFIDYITDLREYDVPYHVRFAIDIDVRCGQWYDVNVSSSGVTLEKRTDLLQR
AEVHVCAFDIETTKLPLKFPDAEYDSIMMISYMVDGQGYLIINRECVAEDIEDIEYTPKP
EYEGHFKVTNVKNEEGLLRHWFAHMQVAKPGIYVTYNGDFFDWPFVETRATHYGLSLKDE
LGFSCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMV
RFAKEKPQMMASYSVSDAVSTYYLYMTYVHPFIFSLATIIPMPPDEVLRKGSGTLCEMLL
MVQAYKANVICPNKHQSDPEKFYGSQLLDSETYIGGHVECLESGVFRSDIPTSFKLDPSA
YELLINNLDRDLQYAIGVEGKMGLECVINYDEVKSAIMEKLMRLRDNPSREECPLIYHLD
VAAMYPNIILTNRLQPPSIVSDEICTACDFNRPGKKCLRKLEWVWRGEMYMAKRSDYYHI
KRQLESELFEVGDGQRSKSFLDLPKADQQVKLKDRLKKYCQKAYKRVLEKPVTEVREAGI
CMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVVYDSLQL
AHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWC
ALPGSFPENYTFKTKDPKKKLTISYPCVMLNVDVARNNTNDQYQTLKDPINKTYTIHSEC
SIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQA
ELFDKFLHGSTLEECYSAVASVADRWLDLLDNQGQDIADSELLGYISESSTMSKSLADYG
EQKSCAVTTAKRLADFLGDAMVKDKGLLCQYIVACEPKGTPVSERAIPVAIFETNAEIMR
FYVKKWCKISSDVGIRSIIDWSYYKQRLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLYK
KVREKEDKFRQRKLNDIFSSVNKDDTVASKHSKNQQNIEDLEDFRNSGKSSIFGPRPVVH
RHGVNKEHPVNTSDQLDSQQQNGHASSPSKMLPSQEIVDVEDIDRDVDYHGWLQQKKRKW
KEIREERKRQRLDTSRTVNHVNGSTDMFHSMVNRKREGKSGVNSYFERHELALTRSHWQI
VQLEPASQHGRFFAWVVVEGLMHKISVTIPRVFYLNSKAPITEEFPGRRVNKILPHGRHS
YNLIEVTIDEDQFKSESKKLAAHLADPEVEGIYETKVPLEFSAILQMGCVCKVDKATKKR
NPQDGWSLSELHMKTTTECPYLDQSIAFFYLYHSVSDVRAIYVGHFPVSKMIHAVVVNPF
QNKELSPNVLERHFYEACQTLSGQPITEKEGISFKLDYVRYIKDAERILQRAINEHRHHG
PAVAMIECPNTHLMKSGIRALEDFPCISIPCNARDSQYQALGWQNVAAKIGMQRCATSSQ
WLNERITLSRYAHVPIGNFDVDWLMHTADIFFSRALRDQQQVLWISDNGIPDLGGINDEV
SSFMDEVNQPVLTYPGAYRKVTVELKIHHLAVDALLKSNQVNEMEGGTLFGLDHDLNPTA
NFTNEQYLFDATTSCAPAFRVLKQLIQRCLTDAVTSGNIFADAMLQHLYRWLCSPRSRLH
DPALHSMLHKVMQKMFALLVAELRKLGAAIVFASFSKIIIDTGKSDIFAAKAYCDNVIKN
VQSRELFEWIELEPLQFWHSLLFMDQYNYGGIQARHSDGPLEVNSEPGEESACNESQVDI
VSSWNIAENLPKATQDHFILIVSEFMYVPWKYAQEQATHRASTSDGDLCTPSITAALTET
FDLQMAEDLKKKIGTYFTDKLLKIVCDPNLQMKVMHNSQKIQETPDANSQSYSHVQKGDP
ALEFIKHVCAVLALDQNVQHEVLIMRKNLLKLVRVREFAPEAEFRSLSVSYTLPNVNCSY
CNDCRDLDLCRDRALISQEWRCAVPQCGQPYDREAMENALVQIVRQRERLYHLQDLVCQK
CHQIKAAHLADHCACAGSFSCKEDISDFRNKMQVFLNIAVNQKFQLLQECTSWILEAR
NT seq 6657 nt   +upstreamnt  +downstreamnt
atgaacgccgctgaaaatagccggcgctgggaccggcgagatactaggttttcaaagaaa
cagaaactcatacttaactctgaagaacagctcgaatccaagctcgggtttgatgttttc
actgaaggagataaacggctcggctggcttcttactctcgcctcttcgtcgtgggaggat
caggagactcgcaaagtgtacagttgtgttgatctttattttgtttgtcaggatggctca
acattcaaagcaaagtacaaattcaggccatatttttacgtggcaacaaaggataaaatg
gaaatggatgtcgactcatatctgagaaggcgatatgaatctcaaattgcagatattgaa
gttttagagaaagaggatcttgatcttaaaaaccatctgtctggcctacacagatcatat
ttaaagatatcatttgacactgtccaacagttgatggatgtgaagcgtgatctgacacac
attgttgagagaaatcaaacaaagtttgatactatagaagcatatgaatctatactgacg
gggaaaagcaagcagcgaggtcaagattttatagattatatcactgatctacgtgaatac
gatgtcccctaccatgttcgctttgccattgacattgatgttagatgtggtcagtggtat
gatgtcaatgtatctagctccggtgttacgttggagaagaggactgatctcttgcagcga
gctgaagttcatgtttgcgcctttgatattgaaaccacaaagcttcctcttaaatttcct
gatgccgaatatgattccataatgatgatctcatacatggttgatggccaaggctatctc
attattaacagagagtgtgttgcggaagatattgaggatattgagtataccccaaagcca
gaatatgaagggcattttaaagtgacaaatgtgaaaaatgaggaagggctccttagacac
tggtttgcacacatgcaagtggcgaagcccggtatctatgtaacatataacggtgacttc
tttgattggccatttgttgagacaagagctactcattatggcttgagtctgaaggatgag
cttggcttttcctgtgacaagaatcaaggggaatgtcgtgctaaatttgcttgccatctg
gactgttttgcttgggtcaaacgtgatagttatcttcctcaaggaagccaaggtctgaag
gctgtaacgaaggccaagttgggttatgatcctctagaagttaatcctgaggatatggtt
cgctttgcaaaggaaaaaccacagatgatggcttcatattctgtttcagatgctgtttca
acttattacttgtatatgacttatgttcatcccttcattttctcccttgcaaccataata
cccatgccgccggatgaagtcttgcgcaaaggaagtgggactttgtgtgaaatgcttctt
atggttcaggcttataaggcaaatgttatctgtccaaacaagcaccagtctgatccagag
aagttttatggtagtcaactccttgacagtgagacatacattggtggtcatgtggaatgc
ctagaaagtggtgtattcagatctgacatcccaaccagttttaaactcgatccttctgcc
tatgagctattgatcaacaaccttgatagagatctgcagtatgctattggagttgagggg
aagatgggcttggaatgtgtcataaattatgatgaagtgaagagtgccatcatggaaaag
ctaatgagattacgagataatccttcaagggaagaatgccccctcatatatcatcttgat
gtagccgccatgtatccaaacattatacttacaaataggcttcagccaccatcaatagta
tcagatgagatatgcactgcatgcgattttaatcgtcctggcaaaaagtgtctccgaaag
cttgaatgggtttggcgtggtgaaatgtacatggcaaaaaggagtgattattaccacata
aagagacaactcgagtccgaactttttgaagtaggagatggtcaacgatcaaagtctttt
cttgatttgccaaaagcagatcagcaagtaaagctcaaagaccgtttaaagaaatactgt
caaaaggcatataaaagagttcttgaaaagccggtcacagaagttcgagaagcagggatc
tgcatgcgagaaaatcctttttatgttgataccgtacggagtttccgagataggaggtat
gaatataaagggcttaataaagtttggaaaggtaagctgtctgaagcaaaggctagtgga
aattccataaagattcaagaagcgcaggacatggtagttgtgtatgattcattgcaactg
gctcataaatgcattttaaactccttttatggttatgtcatgcgcaagggtgcaagatgg
tactcaatggagatggctggagttgttacatataccggtgcaaaaatcattcagaatgct
cgattgttggttgaaaaaattggaaaacccctcgaattagacacagatggtatttggtgt
gcattacctggctctttccctgagaattataccttcaagacaaaagatccaaagaagaag
ctgacaatctcttatccttgcgtaatgctgaatgttgatgtggcaagaaacaataccaat
gatcagtaccagacgctcaaggaccccatcaataagacatatacaatacacagtgaatgc
tcaattgagtttgaagtggatggaccatataaggcaatgattcttcccgcttccaaggaa
gaaggtattctaataaagaagcgctatgcagttttcaatgatgatggtacgcttgccgaa
cttaaaggttttgagattaaacgtagaggtgagcttaagctcatcaaagttttccaggct
gagctttttgataagttcctccatggatcaaccttagaggaatgttattcagcagttgct
tctgtggcagatcggtggcttgacctgcttgataatcaaggccaagatattgcagacagt
gagttgcttggatatatatctgaatcaagcacaatgagcaagtccctagccgattatggt
gagcagaagtcatgtgcagtaaccacagctaaacggcttgctgattttctaggggatgca
atggtcaaagataaaggattgctttgtcaatatattgttgcatgtgagccaaagggaacc
ccagtaagtgaacgtgctattcctgttgcaatatttgaaactaatgctgagatcatgagg
ttctatgtcaaaaagtggtgcaaaatatcatcagatgtcggaatacgctccattattgat
tggtcttattacaagcaacgacttagttcagcaatccaaaagattatcacaattcctgct
gcaatgcagaaggtttcaaaccctgtcccaagggtggttcatcctgattggctgtataag
aaggttcgtgaaaaagaagacaaatttcgccaacgaaaattgaatgatatcttcagttca
gtgaacaaagatgacacagtggccagtaaacattctaaaaatcagcaaaatattgaagac
ctggaagactttagaaacagtggtaaatcgtctatatttggtccaaggcctgttgttcat
cgtcatggagtcaacaaagaacatccagtgaacactagtgatcaattggacagtcaacag
caaaatggtcatgctagcagtccatccaagatgttaccttcacaagaaattgttgatgtg
gaagatattgacagggatgtagattatcatggatggctacagcaaaaaaagagaaaatgg
aaagagattcgtgaagaaaggaaacgccaaaggttggatacttcaaggacagtaaaccat
gttaatggcagtactgacatgtttcatagcatggtaaaccgcaaacgcgagggtaaaagt
ggggttaattcctactttgagcgacacgaattagccctcacacgaagtcactggcagata
gttcagcttgaaccggcttcacaacatggacgattttttgcatgggtagttgtggaagga
ctcatgcacaaaatttcagtaactatccccagagtgttttacctcaactccaaagctccc
ataacagaggaatttcctggaagacgtgtcaacaagattcttcctcatggacgccatagc
tacaatttaattgaggtaactattgatgaggatcaattcaagtcagaaagcaaaaagcta
gcagctcaccttgctgacccagaagtggagggaatatatgaaacaaaggttccattagag
ttcagtgctattcttcagatgggttgtgtttgtaaagtggataaagcaactaagaaaagg
aatccgcaagatggttggagtttgagtgagctgcatatgaagacaacaactgagtgcccg
tatttggatcagtcaatagctttcttctacttatatcatagtgtgtcggatgtacgagcc
atttatgtgggacattttcctgtgtccaagatgatacatgctgtggttgttaatccattt
caaaacaaggaattatcaccaaacgttcttgaaagacatttttatgaagcttgccaaaca
ttgtctgggcagcctatcacagaaaaggaaggtattagtttcaagttggattatgtcagg
tatatcaaggatgctgagaggattctacagagagcaattaacgagcataggcatcatgga
cctgcagttgccatgattgaatgccctaatactcatttaatgaagtctggcatacgagct
ttggaggattttccttgcatcagtatcccttgtaatgctcgggatagtcaatatcaggca
ctaggttggcaaaatgtagcagcaaagatcggaatgcagcgatgtgcgacatcctcccag
tggctaaatgaaaggatcactctctcaagatatgcccatgttcccatagggaattttgat
gttgattggctcatgcatacagcagatatcttcttttccagagcacttcgtgatcagcaa
caggtcttgtggatatctgataatggtatccctgacttaggaggcataaatgatgaagta
tcatcttttatggatgaggtcaatcaaccagttcttacttatccaggtgcatatagaaaa
gttactgttgagctgaagattcatcatctggctgttgatgctctactgaaaagcaaccaa
gtaaacgaaatggaaggaggcactctgtttggattggaccatgacttgaaccctacggca
aattttactaatgaacagtacttatttgacgcaacaacatcctgtgcacctgcatttcgt
gtactcaagcagttgattcaaaggtgccttacagatgcagtaacatcaggaaacatattt
gctgatgcaatgctgcaacatttgtaccgatggctctgcagcccccgatctagactgcat
gacccagctcttcacagtatgcttcacaaggttatgcaaaagatgtttgcattgcttgtc
gctgaactccgaaaattgggtgctgctattgtatttgccagcttctcaaaaattataatc
gacactgggaagtcagatatttttgctgccaaagcctactgtgataatgttattaaaaat
gtacaatcaagagaattgtttgagtggattgaacttgagccgttgcagttttggcactca
ttgcttttcatggatcagtacaattatggcggaattcaagctagacatagtgatggacct
ctagaagttaactcagaaccaggtgaagaaagtgcgtgtaatgaatctcaagtcgatatc
gtgtcaagctggaacattgcagaaaatttaccgaaggcaactcaggatcacttcattttg
attgtttcggagtttatgtatgttccatggaaatatgcacaagaacaagctacacatcga
gcatctactagcgatggtgatttatgtacaccgtcaatcacagctgcacttactgaaaca
tttgatttgcaaatggcggaagatctaaagaagaagattggaacttacttcactgacaaa
cttctgaaaattgtttgtgaccctaatcttcaaatgaaagtgatgcacaactctcagaag
atccaggagacaccagatgcaaactcacaatcttatagccatgtccagaagggggatcca
gctttagagttcattaagcatgtctgtgcagttttggccctggaccagaatgtgcagcat
gaagttctgatcatgaggaaaaatctattaaaacttgtccgtgtgagggaatttgctccg
gaggcagaatttcgtagtctctctgtatcatatacccttccaaatgtcaattgcagttac
tgcaatgactgcagagaccttgacttgtgtcgagacagagcgttgatttctcaggagtgg
cgttgtgctgtgccccaatgtgggcaaccttatgatcgtgaagcaatggaaaatgctctt
gttcaaattgttcggcagagagagaggctataccatcttcaggatttggtatgccaaaaa
tgccaccagattaaagctgcacatttagcagatcactgtgcttgtgccggatcatttagc
tgcaaggaagacatctcagatttccgcaataaaatgcaagtcttcttgaacatagccgta
aatcaaaagtttcaattgctccaagaatgcacttcttggattttggaagccagataa

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